MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.5 nTPM
HPA Brain:21.4 nTPM
GTEx:6.5 nTPM
FANTOM5:8.5 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:9.4 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2586 Male, age 75, left hemisphere 43.5
2828 Female, age 72, unknown 16.4
1833 Male, age 53, unknown 15.2
2666 Male, age 74, left hemisphere 14.7
1827 Male, age 72, unknown 13.9
1830 Male, age 51, unknown 13.7
1870 Female, age 42, unknown 13.6
2019 Male, age 18, unknown 13.6
2411 Female, age 72, unknown 11.6
2219 Male, age 76, both hemispheres 10.9
Dorsal raphe nucleus
nTPM: 16.8
2047 Male, age 72, unknown 20.4
1828 Male, age 53, unknown 17.4
2750 Male, age 76, both hemispheres 16.9
2016 Female, age 72, unknown 15.2
2298 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 15.3
1848 Female, age 42, unknown 18.5
2849 Male, age 72, unknown 16.3
1890 Male, age 53, unknown 15.2
2097 Female, age 72, unknown 11.1
Median raphe nucleus
nTPM: 10.8
2220 Male, age 76, midline 10.8
Periaquaductal grey, anterior
nTPM: 21.4
2502 Female, age 75, unknown 23.6
1947 Male, age 18, unknown 21.2
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 16.0
2850 Male, age 76, both hemispheres 20.5
1840 Male, age 53, unknown 17.0
2464 Female, age 72, unknown 15.6
1831 Male, age 72, unknown 11.1
Periaquaductal grey, lateral
nTPM: 18.5
2140 Male, age 76, both hemispheres 25.9
2272 Male, age 74, both hemispheres 16.2
2053 Male, age 18, unknown 13.5
Pretectal area
nTPM: 13.6
2273 Male, age 74, both hemispheres 16.2
2825 Male, age 18, unknown 15.7
2224 Female, age 72, unknown 15.6
2316 Male, age 76, right hemisphere 15.0
1817 Female, age 42, unknown 13.4
2007 Male, age 72, unknown 13.4
2667 Female, age 75, unknown 12.9
1816 Male, age 51, unknown 12.4
1944 Female, age 72, unknown 11.6
1815 Male, age 53, unknown 11.4
2407 Male, age 75, both hemispheres 11.4
Red nucleus
nTPM: 15.5
2584 Male, age 75, left hemisphere 21.7
2588 Male, age 74, left hemisphere 20.9
2227 Male, age 72, unknown 18.5
2769 Male, age 72, unknown 17.8
1954 Female, age 42, unknown 16.6
1904 Male, age 53, unknown 16.1
1865 Male, age 51, unknown 14.1
2503 Female, age 72, unknown 13.6
2725 Female, age 75, unknown 13.0
1821 Female, age 72, unknown 12.4
2785 Male, age 18, unknown 12.3
2823 Male, age 76, right hemisphere 8.7
Substantia nigra
nTPM: 13.5
2699 Male, age 18, unknown 19.4
1916 Female, age 42, unknown 16.5
2665 Male, age 74, both hemispheres 16.0
1851 Male, age 51, unknown 13.5
2241 Male, age 72, unknown 13.4
2583 Male, age 75, right hemisphere 12.4
2590 Female, age 75, unknown 11.8
1889 Female, age 72, unknown 11.7
1941 Male, age 53, unknown 10.5
2409 Female, age 72, unknown 9.6
Superior colliculus
nTPM: 14.1
2664 Male, age 75, both hemispheres 20.7
2668 Female, age 75, unknown 16.8
1839 Male, age 51, unknown 15.4
2261 Male, age 18, unknown 14.9
2587 Male, age 74, left hemisphere 14.8
1796 Male, age 53, unknown 14.5
1895 Male, age 76, right hemisphere 12.4
2087 Female, age 72, unknown 11.4
1995 Male, age 72, unknown 11.0
1913 Female, age 42, unknown 9.2
Ventral tegmental area
nTPM: 12.7
1942 Male, age 51, unknown 15.7
2021 Male, age 53, unknown 14.6
1915 Female, age 42, unknown 13.6
2218 Male, age 76, both hemispheres 11.6
2223 Female, age 72, unknown 10.8
2410 Female, age 72, unknown 10.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.5
Samples: 139

Max nTPM: 21.0
Min nTPM: 1.1
Std nTPM: 4.1
Median nTPM: 5.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 21.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 19.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 18.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 17.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 17.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 16.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 16.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 14.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 14.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 13.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 13.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 27.1
Min nTPM: 18.5
Sample A Female 22.3
Sample B Female 18.5
Sample C Male 27.1
Sample D Male 25.2
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 37.1
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 19.9
Sample C Male 37.1
Sample D Male 34.9
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 23.8
Min nTPM: 19.9
Sample B Female 20.3
Sample C Male 23.8
Sample D Male 19.9
Superior colliculi
nTPM: 30.2
Samples: 4

Max nTPM: 37.1
Min nTPM: 15.8
Sample A Female 36.1
Sample B Female 15.8
Sample C Male 31.6
Sample D Male 37.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.9
Sample A Male 11.2
Sample B Male 9.6
Sample C Female 7.9
Sample D Female 9.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70593339 Antisense, RP_050407_03_E06, Mouse strain C57BL/6J (56 days, male) 0.5

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