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  • TPM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:53.6 nTPM
FANTOM5:11.5 Scaled Tags Per Million
Pig:11.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047089Antibody HPA053624
Glial cells Not detectedMedium
Neuronal cells LowMedium

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.6
Samples: 246

Max nTPM: 118.4
Min nTPM: 13.4
Std nTPM: 20.2
Median nTPM: 51.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 118.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 114.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 105.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 103.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 103.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 99.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 96.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 92.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 92.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 91.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 91.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 90.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 89.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 88.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 87.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 87.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 84.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 84.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 84.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 84.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 84.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 83.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 82.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 82.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 80.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 80.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 79.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 78.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 78.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 78.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 77.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 77.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 77.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 76.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 75.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 75.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 75.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 75.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 75.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 74.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 74.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 74.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 74.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 74.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 74.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 73.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 73.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 73.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 72.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 72.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 71.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 71.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 69.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 69.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 68.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 68.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 68.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 67.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 67.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 67.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 67.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 67.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 66.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 66.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 66.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 65.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 65.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 65.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 64.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 64.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 63.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 62.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 62.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 62.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 62.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 62.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 62.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 62.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 61.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 61.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 61.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 61.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 61.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 60.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 60.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 59.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 59.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 59.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 59.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 59.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 58.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 58.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 57.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 57.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 57.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 57.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 57.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 56.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 56.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 56.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 56.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 56.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 55.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 55.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 55.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 55.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 55.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 55.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 54.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 53.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 53.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 53.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 53.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 53.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 53.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 52.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 52.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 52.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 52.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 52.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 51.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 51.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 51.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 50.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 50.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 50.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 50.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 49.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 49.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 49.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 48.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 48.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 48.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 48.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 47.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 47.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 47.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 46.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 46.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 46.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 46.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 46.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 46.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 46.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 45.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 45.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 45.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 45.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 45.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 45.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 44.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 44.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 44.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 44.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 43.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 43.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 43.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 43.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 43.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 43.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 43.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 43.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 43.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 42.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 42.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 42.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 42.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 42.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 42.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 41.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 41.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 41.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 41.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 40.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 40.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 40.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 40.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 40.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 40.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 39.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 38.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 38.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 38.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 38.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 37.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 37.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 37.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 37.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 37.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 37.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 37.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 37.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 36.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 36.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 35.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 35.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 35.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 34.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 34.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 34.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 33.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 33.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 33.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 33.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 33.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 33.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 32.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 32.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 32.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 32.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 32.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 32.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 31.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 31.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 30.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 30.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 30.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 28.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 28.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 28.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 28.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 27.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 27.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 27.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 26.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 26.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 26.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 26.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 25.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 25.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 25.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 25.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 22.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 22.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 22.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 21.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 21.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 21.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 19.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 16.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 14.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 14.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 13.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.5
FF:10164-103B2 76 years, female 11.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.8
Pig sample Sample description nTPM
Caudate
nTPM: 11.8
Samples: 4

Max nTPM: 14.2
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 14.2
Sample C Male 13.8
Sample D Male 11.0

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