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ECI2
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  • ECI2
CANCER LIVER CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
LIHC TCGA LIHC VALIDATION PROTEIN LIHC CPTAC PROTEIN EXPRESSION
ANTIBODIES
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VALIDATION
Dictionary
Liver cancer
Human cancer
Liver hepatocellular carcinoma
LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

ECI2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 163.77
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 178.1
Number of samples 362
Samples
Sample Description pTPM
TCGA-G3-A6UC-01A 65 years, male, white, stage:Stage IIIB, alive, 671 days 605.2
TCGA-CC-A7IH-01A 58 years, male, asian, stage:Stage IIIA, alive, 365 days 596.7
TCGA-RC-A6M4-01A 74 years, female, white, stage:Stage IIIA, alive, 22 days 538.8
TCGA-DD-AAW3-01A 69 years, male, asian, stage:Stage I, alive, 1633 days 513.8
TCGA-DD-A73E-01A 66 years, male, white, stage:Stage I, alive, 44 days 465.9
TCGA-G3-A5SL-01A 70 years, male, white, stage:Stage II, alive, 621 days 463.7
TCGA-DD-A73D-01A 68 years, female, white, stage:Stage II, alive, 693 days 444.1
TCGA-DD-AADG-01A 70 years, male, asian, stage:Stage IIIA, alive, 1145 days 418.6
TCGA-DD-AAW2-01A 69 years, male, asian, stage:Stage I, alive, 1855 days 408.7
TCGA-CC-A7IL-01A 61 years, male, asian, stage:Stage IIIA, dead, 278 days 407.2
TCGA-5R-AA1C-01A 57 years, male, white, stage:Stage II, alive, 520 days 405.5
TCGA-DD-AACE-01A 62 years, male, asian, stage:Stage I, alive, 2184 days 394.6
TCGA-G3-A5SI-01A 44 years, male, asian, stage:Stage II, dead, 768 days 387.5
TCGA-DD-A3A8-01A 75 years, male, white, stage:Stage II, dead, 11 days 369.6
TCGA-ED-A7PZ-01A 61 years, male, asian, stage:Stage II, alive, 6 days 367.7
TCGA-DD-AAE4-01A 49 years, female, asian, stage:Stage I, alive, 608 days 363.4
TCGA-DD-AADL-01A 58 years, male, asian, stage:Stage I, alive, 636 days 356.9
TCGA-2Y-A9GZ-01A 82 years, female, white, stage:Stage II, dead, 848 days 353.6
TCGA-DD-AAVY-01A 56 years, male, asian, stage:Stage IIIA, alive, 1970 days 352.0
TCGA-PD-A5DF-01A 58 years, female, white, stage:Stage IIIB, dead, 639 days 342.0
TCGA-G3-AAV4-01A 83 years, female, white, stage:Stage I, dead, 27 days 333.7
TCGA-DD-AAVS-01A 56 years, male, asian, stage:Stage I, alive, 1823 days 331.8
TCGA-MI-A75H-01A 77 years, male, white, stage:'--, alive, 747 days 329.9
TCGA-DD-A11C-01A 69 years, male, white, stage:Stage I, alive, 662 days 324.9
TCGA-MI-A75I-01A 61 years, male, black or african american, stage:'--, alive, 630 days 324.3
TCGA-RC-A7SK-01A 59 years, male, asian, stage:Stage I, alive, 472 days 323.1
TCGA-DD-A4NE-01A 75 years, female, white, stage:Stage IIIA, dead, 660 days 318.7
TCGA-2Y-A9HA-01A 70 years, male, white, stage:Stage II, dead, 36 days 315.9
TCGA-DD-AAE3-01A 50 years, male, asian, stage:Stage I, alive, 566 days 312.0
TCGA-G3-A25S-01A 64 years, male, white, stage:Stage I, dead, 416 days 309.1
TCGA-BD-A2L6-01A 69 years, male, white, stage:'--, alive, 1363 days 305.2
TCGA-DD-A73B-01A 72 years, female, white, stage:Stage I, dead, 283 days 300.0
TCGA-FV-A3R2-01A 75 years, male, white, stage:Stage I, dead, 194 days 299.9
TCGA-DD-A3A5-01A 66 years, female, white, stage:Stage III, dead, 3125 days 299.6
TCGA-2Y-A9H4-01A 68 years, male, black or african american, stage:Stage I, alive, 1452 days 297.1
TCGA-BC-A69I-01A 69 years, male, white, stage:Stage I, alive, 387 days 296.0
TCGA-G3-AAV3-01A 58 years, female, white, stage:Stage II, alive, 412 days 290.5
TCGA-QA-A7B7-01A 48 years, male, black or african american, stage:Stage II, alive, 94 days 287.7
TCGA-XR-A8TC-01A 43 years, female, white, stage:Stage I, alive, 1339 days 284.0
TCGA-T1-A6J8-01A 68 years, male, white, stage:'--, alive, 23 days 281.2
TCGA-DD-AAE2-01A 51 years, male, asian, stage:Stage I, alive, 638 days 278.3
TCGA-EP-A12J-01A 62 years, male, black or african american, stage:Stage I, alive, 570 days 277.0
TCGA-EP-A26S-01A 70 years, male, white, stage:Stage I, alive, 608 days 276.1
TCGA-GJ-A9DB-01A 68 years, male, white, stage:Stage I, dead, 67 days 273.5
TCGA-G3-A3CK-01A 61 years, male, asian, stage:Stage I, alive, 585 days 272.6
TCGA-ED-A7XO-01A 29 years, male, asian, stage:Stage IIIA, alive, 427 days 270.0
TCGA-BC-A217-01A 75 years, female, white, stage:Stage II, dead, 1397 days 268.5
TCGA-DD-A11B-01A 73 years, male, white, stage:Stage I, dead, 14 days 267.4
TCGA-DD-A1EB-01A 72 years, female, stage:Stage I, alive, 2017 days 263.9
TCGA-DD-AAEH-01A 73 years, male, asian, stage:Stage I, alive, 784 days 261.2
TCGA-DD-A1EH-01A 23 years, male, white, stage:Stage III, alive, 1495 days 260.5
TCGA-DD-A4NF-01A 72 years, male, white, stage:Stage I, alive, 942 days 259.1
TCGA-DD-AADP-01A 45 years, male, asian, stage:Stage I, alive, 458 days 259.1
TCGA-DD-A4NS-01A 61 years, female, white, stage:Stage I, dead, 2456 days 258.2
TCGA-2Y-A9GU-01A 55 years, female, white, stage:Stage I, alive, 1939 days 256.9
TCGA-LG-A9QC-01A 48 years, male, white, stage:Stage I, alive, 425 days 256.5
TCGA-DD-A118-01A 77 years, female, white, stage:Stage II, alive, 3437 days 255.9
TCGA-UB-AA0U-01A 60 years, male, white, stage:Stage II, alive, 327 days 255.8
TCGA-DD-A4NN-01A 56 years, female, white, stage:Stage I, dead, 899 days 254.6
TCGA-DD-AADV-01A 50 years, male, asian, stage:Stage I, alive, 574 days 254.0
TCGA-DD-AAD0-01A 73 years, female, asian, stage:Stage I, alive, 137 days 253.9
TCGA-G3-A3CJ-01A 52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days 253.4
TCGA-DD-AACQ-01A 50 years, male, asian, stage:Stage II, dead, 432 days 250.9
TCGA-MI-A75G-01A 63 years, male, white, stage:Stage II, alive, 698 days 247.4
TCGA-2Y-A9H5-01A 59 years, female, white, stage:Stage I, dead, 555 days 247.4
TCGA-ZS-A9CE-01A 79 years, female, white, stage:Stage II, alive, 1241 days 247.4
TCGA-ZS-A9CG-01A 55 years, male, white, stage:Stage II, alive, 341 days 246.7
TCGA-DD-AAVP-01A 48 years, male, asian, stage:Stage I, alive, 2752 days 243.5
TCGA-NI-A8LF-01A 74 years, male, white, stage:Stage I, alive, 799 days 243.4
TCGA-2Y-A9GV-01A 54 years, female, white, stage:Stage I, dead, 2532 days 242.4
TCGA-BC-A10U-01A 69 years, male, white, stage:'--, dead, 837 days 241.9
TCGA-ED-A8O5-01A 59 years, female, asian, stage:Stage IIIA, alive, 406 days 241.0
TCGA-ZP-A9D0-01A 67 years, female, black or african american, stage:'--, alive, 1091 days 239.9
TCGA-DD-AAEG-01A 59 years, female, asian, stage:Stage I, alive, 719 days 237.4
TCGA-BC-A10R-01A 66 years, female, white, stage:'--, dead, 308 days 236.9
TCGA-DD-A4NJ-01A 54 years, female, white, stage:Stage II, alive, 928 days 236.8
TCGA-CC-A8HU-01A 39 years, female, asian, stage:Stage IIIA, dead, 344 days 236.6
TCGA-DD-A4NP-01A 32 years, male, white, stage:Stage I, alive, 3308 days 235.8
TCGA-BC-A3KG-01A 68 years, female, white, stage:Stage II, alive, 680 days 235.4
TCGA-DD-AAEK-01A 51 years, male, asian, stage:Stage II, alive, 1067 days 234.3
TCGA-DD-A1EE-01A 73 years, male, white, stage:Stage IIIA, dead, 349 days 234.1
TCGA-2Y-A9HB-01A 66 years, male, stage:Stage I, alive, 260 days 234.1
TCGA-DD-A4NK-01A 80 years, female, white, stage:Stage IIIA, dead, 1210 days 233.3
TCGA-LG-A6GG-01A 79 years, female, white, stage:Stage II, alive, 387 days 233.1
TCGA-UB-A7ME-01A 51 years, male, asian, stage:Stage I, alive, 486 days 231.1
TCGA-FV-A2QQ-01A 80 years, male, white, stage:Stage I, alive, 729 days 231.1
TCGA-DD-AACV-01A 53 years, male, asian, stage:Stage I, alive, 1531 days 229.9
TCGA-DD-AAVR-01A 44 years, male, asian, stage:Stage I, alive, 2513 days 229.9
TCGA-DD-A3A9-01A 64 years, female, white, stage:Stage IVB, dead, 931 days 229.9
TCGA-DD-AAD3-01A 43 years, male, asian, stage:Stage I, alive, 1295 days 229.2
TCGA-DD-AAE9-01A 69 years, male, asian, stage:Stage I, alive, 722 days 227.4
TCGA-DD-AAEE-01A 55 years, male, asian, stage:Stage I, alive, 810 days 227.0
TCGA-DD-AADM-01A 58 years, male, asian, stage:Stage II, dead, 12 days 226.8
TCGA-FV-A495-01A 51 years, female, white, stage:Stage II, alive, 1 days 224.6
TCGA-DD-A73C-01A 65 years, female, white, stage:Stage IIIA, alive, 701 days 223.6
TCGA-BC-A10T-01A 76 years, male, white, stage:'--, dead, 837 days 223.6
TCGA-DD-AADF-01A 64 years, female, asian, stage:Stage I, dead, 115 days 223.0
TCGA-BC-A8YO-01A 66 years, female, white, stage:Stage IIIC, alive, 562 days 222.9
TCGA-O8-A75V-01A 54 years, male, stage:Stage I, alive, 538 days 221.8
TCGA-BC-A10Y-01A 76 years, male, white, stage:'--, dead, 711 days 219.8
TCGA-DD-AACU-01A 59 years, male, asian, stage:Stage I, alive, 1567 days 219.7
TCGA-DD-AADD-01A 51 years, male, asian, stage:Stage I, alive, 1231 days 219.4
TCGA-RC-A7SB-01A 53 years, male, asian, stage:Stage II, alive, 588 days 219.0
TCGA-DD-AACW-01A 43 years, male, asian, stage:Stage I, alive, 1424 days 218.6
TCGA-XR-A8TG-01A 58 years, male, white, stage:Stage I, alive, 898 days 217.7
TCGA-BC-A3KF-01A 66 years, female, white, stage:Stage I, alive, 8 days 216.3
TCGA-DD-A39Z-01A 43 years, female, stage:Stage II, dead, 601 days 216.0
TCGA-3K-AAZ8-01A 65 years, male, black or african american, stage:Stage IIIB, alive, 396 days 215.6
TCGA-G3-A3CG-01A 80 years, male, white, stage:Stage I, alive, 673 days 215.0
TCGA-ZS-A9CF-01A 64 years, male, white, stage:Stage II, alive, 2412 days 214.5
TCGA-G3-A7M5-01A 76 years, male, asian, stage:Stage I, alive, 447 days 212.4
TCGA-DD-AAVU-01A 46 years, male, asian, stage:Stage II, alive, 2202 days 212.2
TCGA-BC-A5W4-01A 69 years, male, white, stage:Stage IIIA, dead, 547 days 211.5
TCGA-HP-A5N0-01A 90 years, female, stage:'--, dead, 752 days 210.4
TCGA-ZP-A9D4-01A 64 years, female, white, stage:'--, alive, 395 days 209.8
TCGA-DD-AADW-01A 48 years, male, asian, stage:Stage I, alive, 587 days 209.1
TCGA-XR-A8TF-01A 74 years, male, white, stage:Stage I, dead, 693 days 208.8
TCGA-DD-A115-01A 53 years, male, white, stage:Stage IIIA, dead, 2542 days 208.7
TCGA-G3-A25Y-01A 52 years, female, asian, stage:Stage I, dead, 452 days 207.2
TCGA-EP-A2KC-01A 62 years, male, black or african american, stage:Stage I, dead, 19 days 206.1
TCGA-2Y-A9H9-01A 70 years, male, white, stage:Stage I, alive, 697 days 205.5
TCGA-2Y-A9GS-01A 58 years, male, white, stage:'--, dead, 724 days 205.4
TCGA-WX-AA46-01A 61 years, male, white, stage:Stage II, alive, 756 days 205.3
TCGA-DD-A73F-01A 77 years, female, white, stage:Stage I, alive, 1085 days 205.2
TCGA-DD-AADY-01A 55 years, female, asian, stage:Stage I, alive, 555 days 205.1
TCGA-ED-A7PY-01A 20 years, female, asian, stage:Stage II, alive, 390 days 204.6
TCGA-DD-AADQ-01A 59 years, male, asian, stage:Stage II, alive, 436 days 204.4
TCGA-DD-A1EG-01A 76 years, male, white, stage:Stage I, dead, 1372 days 204.3
TCGA-G3-A7M8-01A 31 years, male, asian, stage:Stage I, alive, 430 days 202.4
TCGA-FV-A4ZQ-01A 52 years, male, white, stage:Stage I, alive, 12 days 200.5
TCGA-CC-A3MB-01A 36 years, male, asian, stage:Stage IIIA, dead, 315 days 199.0
TCGA-WX-AA44-01A 64 years, female, white, stage:Stage I, alive, 615 days 198.2
TCGA-DD-AACB-01A 74 years, female, asian, stage:Stage I, alive, 2324 days 198.2
TCGA-DD-AAVW-01A 35 years, male, asian, stage:Stage I, alive, 2317 days 197.3
TCGA-ZP-A9D1-01A 56 years, female, white, stage:'--, alive, 21 days 197.2
TCGA-DD-AADA-01A 66 years, female, asian, stage:Stage I, alive, 1233 days 196.7
TCGA-DD-A39W-01A 29 years, female, white, stage:Stage III, dead, 827 days 195.2
TCGA-DD-AAW1-01A 55 years, male, asian, stage:Stage IIIA, alive, 1989 days 194.5
TCGA-ED-A4XI-01A 58 years, male, asian, stage:Stage II, alive, 819 days 192.5
TCGA-EP-A3RK-01A 73 years, male, white, stage:Stage IIIA, alive, 363 days 192.0
TCGA-G3-AAV2-01A 50 years, male, white, stage:Stage I, alive, 372 days 189.6
TCGA-UB-A7MF-01A 56 years, male, white, stage:Stage IIIA, dead, 214 days 188.7
TCGA-ZP-A9CY-01A 66 years, female, white, stage:'--, alive, 782 days 186.9
TCGA-DD-A113-01A 55 years, female, white, stage:Stage II, alive, 2425 days 185.6
TCGA-RG-A7D4-01A 69 years, male, black or african american, stage:Stage II, alive, 1098 days 185.2
TCGA-DD-A4NI-01A 67 years, male, white, stage:Stage II, alive, 816 days 185.0
TCGA-EP-A2KB-01A 46 years, female, white, stage:Stage I, dead, 596 days 184.5
TCGA-DD-AACT-01A 69 years, female, asian, stage:Stage I, alive, 1562 days 184.5
TCGA-DD-AACS-01A 39 years, male, asian, stage:Stage I, alive, 1804 days 182.8
TCGA-CC-A7IK-01A 59 years, male, asian, stage:Stage IIIA, dead, 262 days 182.2
TCGA-2Y-A9H8-01A 85 years, female, white, stage:'--, dead, 633 days 181.9
TCGA-XR-A8TE-01A 16 years, male, white, stage:Stage IIIA, alive, 925 days 180.9
TCGA-BC-A10S-01A 81 years, male, white, stage:'--, dead, 1423 days 180.2
TCGA-DD-A1EF-01A 57 years, female, white, stage:Stage I, dead, 394 days 180.1
TCGA-DD-AADR-01A 58 years, male, asian, stage:Stage I, alive, 2028 days 179.7
TCGA-UB-A7MC-01A 59 years, male, white, stage:Stage IIIA, alive, 500 days 179.6
TCGA-G3-AAV5-01A 67 years, male, white, stage:Stage II, alive, 354 days 178.9
TCGA-G3-AAV1-01A 51 years, male, asian, stage:Stage IIIC, dead, 359 days 178.6
TCGA-DD-AADJ-01A 70 years, female, asian, stage:Stage I, alive, 1066 days 177.1
TCGA-DD-A119-01A 40 years, male, asian, stage:Stage IV, dead, 223 days 176.1
TCGA-DD-AAW0-01A 54 years, male, asian, stage:Stage I, alive, 2015 days 175.6
TCGA-BC-A10X-01A 52 years, female, white, stage:Stage IIIA, dead, 770 days 174.9
TCGA-XR-A8TD-01A 49 years, female, white, stage:Stage IIIB, alive, 1030 days 174.7
TCGA-UB-AA0V-01A 69 years, female, white, stage:Stage I, alive, 314 days 174.6
TCGA-DD-AACH-01A 69 years, male, asian, stage:Stage II, dead, 195 days 172.4
TCGA-DD-AACA-01A 65 years, male, asian, stage:Stage I, alive, 2301 days 171.3
TCGA-DD-A116-01A 68 years, male, asian, stage:Stage IIIA, dead, 1622 days 168.9
TCGA-5R-AAAM-01A 65 years, female, white, stage:Stage II, dead, 46 days 168.0
TCGA-DD-A1EJ-01A 71 years, female, white, stage:Stage IIIC, dead, 1005 days 167.2
TCGA-DD-A1ED-01A 68 years, male, white, stage:Stage I, alive, 2301 days 166.8
TCGA-DD-AACI-01A 69 years, male, asian, stage:Stage II, alive, 1618 days 165.9
TCGA-DD-AACJ-01A 75 years, male, asian, stage:Stage II, alive, 2102 days 165.0
TCGA-DD-A4NV-01A 61 years, male, white, stage:Stage IIIA, alive, 2398 days 164.9
TCGA-G3-A25U-01A 63 years, female, asian, stage:Stage I, alive, 1636 days 163.8
TCGA-CC-5261-01A 44 years, male, asian, stage:Stage II, dead, 97 days 163.5
TCGA-DD-A3A2-01A 76 years, female, white, stage:Stage I, dead, 2131 days 163.5
TCGA-FV-A3I1-01A 81 years, female, white, stage:Stage II, dead, 247 days 163.2
TCGA-DD-AACN-01A 32 years, male, asian, stage:Stage I, alive, 1302 days 162.5
TCGA-G3-A3CH-01A 53 years, male, asian, stage:Stage IIIA, alive, 780 days 161.9
TCGA-2Y-A9H7-01A 81 years, female, white, stage:Stage I, alive, 1168 days 161.9
TCGA-DD-AACD-01A 48 years, male, asian, stage:Stage I, dead, 381 days 161.7
TCGA-DD-A1EK-01A 64 years, female, white, stage:Stage IVB, dead, 558 days 161.6
TCGA-ZP-A9CZ-01A 72 years, male, asian, stage:'--, alive, 706 days 161.0
TCGA-GJ-A6C0-01A 75 years, female, white, stage:Stage II, dead, 31 days 161.0
TCGA-KR-A7K0-01A 65 years, male, white, stage:Stage I, dead, 65 days 160.9
TCGA-CC-A5UE-01A 48 years, male, asian, stage:Stage IIIB, dead, 272 days 160.9
TCGA-FV-A2QR-01A 75 years, male, white, stage:Stage I, dead, 581 days 160.9
TCGA-BW-A5NO-01A 50 years, male, black or african american, stage:Stage IIIA, alive, 20 days 160.7
TCGA-2Y-A9H3-01A 45 years, male, white, stage:Stage II, alive, 1516 days 160.5
TCGA-MR-A520-01A 58 years, male, white, stage:Stage I, alive, 229 days 160.3
TCGA-K7-A5RF-01A 64 years, male, white, stage:Stage I, alive, 631 days 159.5
TCGA-DD-A1EA-01A 68 years, male, asian, stage:Stage II, alive, 2415 days 158.4
TCGA-G3-A25X-01A 73 years, male, asian, stage:Stage II, alive, 1779 days 157.5
TCGA-WQ-AB4B-01A 62 years, male, white, stage:Stage II, alive, 395 days 156.6
TCGA-G3-AAUZ-01A 48 years, male, stage:Stage I, alive, 480 days 156.0
TCGA-UB-A7MD-01A 67 years, male, black or african american, stage:Stage I, dead, 52 days 155.7
TCGA-DD-AACF-01A 68 years, male, asian, stage:Stage I, dead, 365 days 155.1
TCGA-ES-A2HS-01A 80 years, male, white, stage:Stage I, dead, 688 days 154.2
TCGA-MI-A75C-01A 64 years, male, white, stage:Stage I, alive, 291 days 153.8
TCGA-2Y-A9GT-01A 51 years, male, white, stage:Stage I, dead, 1624 days 153.1
TCGA-DD-AACG-01A 52 years, male, asian, stage:Stage II, dead, 469 days 152.8
TCGA-G3-A5SM-01A 58 years, male, white, stage:Stage II, alive, 520 days 152.6
TCGA-CC-A8HS-01A 18 years, male, asian, stage:Stage IIIC, dead, 300 days 152.5
TCGA-CC-A9FS-01A 55 years, male, asian, stage:Stage II, alive, 211 days 152.1
TCGA-DD-AACK-01A 70 years, male, asian, stage:Stage I, alive, 9 days 151.6
TCGA-DD-AAVQ-01A 38 years, male, asian, stage:Stage I, alive, 2728 days 150.8
TCGA-CC-5264-01A 71 years, male, asian, stage:Stage IIIA, dead, 102 days 149.7
TCGA-UB-A7MB-01A 24 years, male, white, stage:Stage II, alive, 601 days 149.6
TCGA-2Y-A9H6-01A 68 years, female, white, stage:Stage I, alive, 357 days 149.3
TCGA-DD-AAVX-01A 38 years, male, asian, stage:Stage II, alive, 1718 days 148.3
TCGA-DD-A4NL-01A 46 years, male, white, stage:Stage I, alive, 1711 days 147.9
TCGA-WJ-A86L-01A 68 years, female, white, stage:Stage I, alive, 345 days 147.9
TCGA-DD-AADI-01A 43 years, female, asian, stage:Stage I, alive, 1085 days 147.8
TCGA-G3-A5SK-01A 58 years, male, white, stage:Stage I, alive, 744 days 147.2
TCGA-KR-A7K8-01A 57 years, male, stage:Stage I, alive, 906 days 147.1
TCGA-2Y-A9GY-01A 64 years, female, white, stage:Stage II, dead, 757 days 146.5
TCGA-DD-AAVZ-01A 38 years, male, asian, stage:Stage I, alive, 1900 days 146.2
TCGA-G3-AAV0-01A 58 years, male, asian, stage:Stage I, alive, 476 days 144.7
TCGA-FV-A3R3-01A 38 years, female, white, stage:Stage I, dead, 366 days 143.9
TCGA-G3-A25Z-01A 58 years, male, asian, stage:Stage I, alive, 655 days 143.1
TCGA-DD-A1EL-01A 23 years, male, black or african american, stage:Stage II, dead, 415 days 142.6
TCGA-DD-A11D-01A 57 years, female, white, stage:Stage I, dead, 1560 days 141.8
TCGA-G3-A25V-01A 68 years, male, white, stage:Stage I, alive, 860 days 141.6
TCGA-ED-A66X-01A 35 years, male, asian, stage:Stage IIIA, alive, 406 days 140.7
TCGA-DD-A3A1-01A 65 years, male, stage:Stage IIIA, dead, 233 days 140.3
TCGA-DD-AAC8-01A 72 years, male, asian, stage:Stage I, dead, 16 days 138.1
TCGA-MI-A75E-01A 61 years, male, white, stage:Stage IIIC, alive, 507 days 138.0
TCGA-K7-A6G5-01A 66 years, male, white, stage:Stage I, alive, 512 days 137.3
TCGA-RC-A7S9-01A 47 years, female, asian, stage:Stage I, alive, 640 days 136.0
TCGA-ZS-A9CD-01A 73 years, male, white, stage:Stage II, dead, 1386 days 135.0
TCGA-G3-AAV6-01A 53 years, female, white, stage:Stage IIIA, dead, 65 days 134.5
TCGA-DD-AAVV-01A 56 years, male, asian, stage:Stage II, alive, 2455 days 133.3
TCGA-DD-AADK-01A 68 years, female, asian, stage:Stage II, alive, 1049 days 133.0
TCGA-G3-A3CI-01A 71 years, male, white, stage:Stage I, alive, 180 days 132.3
TCGA-DD-AAE1-01A 52 years, male, asian, stage:Stage I, alive, 552 days 131.3
TCGA-ED-A627-01A 74 years, male, white, stage:Stage I, alive, 423 days 130.4
TCGA-BC-A110-01A 51 years, female, black or african american, stage:'--, dead, 2116 days 130.1
TCGA-CC-A3MC-01A 54 years, male, asian, stage:Stage IIIA, alive, 363 days 130.0
TCGA-CC-5262-01A 67 years, male, asian, stage:Stage IIIC, dead, 103 days 129.9
TCGA-ED-A5KG-01A 60 years, female, asian, stage:Stage II, alive, 854 days 129.9
TCGA-5C-A9VG-01A 58 years, male, white, stage:Stage II, alive, 328 days 128.8
TCGA-2Y-A9H1-01A 58 years, male, white, stage:Stage I, dead, 1229 days 128.6
TCGA-DD-A4NQ-01A 60 years, male, white, stage:Stage II, dead, 373 days 128.4
TCGA-G3-A25T-01A 45 years, female, white, stage:Stage IIIA, alive, 1553 days 127.9
TCGA-DD-A39V-01A 77 years, male, white, stage:Stage II, dead, 643 days 126.5
TCGA-DD-A4NG-01A 77 years, male, white, stage:Stage IIIA, dead, 802 days 126.4
TCGA-CC-A9FW-01A 68 years, male, asian, stage:Stage IIIA, alive, 248 days 126.2
TCGA-ZP-A9D2-01A 51 years, male, white, stage:'--, dead, 765 days 125.4
TCGA-4R-AA8I-01A 66 years, male, white, stage:Stage II, dead, 262 days 125.4
TCGA-BD-A3ER-01A 62 years, male, white, stage:Stage II, alive, 1115 days 125.2
TCGA-ZP-A9CV-01A 59 years, male, white, stage:'--, dead, 1088 days 125.2
TCGA-ED-A8O6-01A 50 years, female, asian, stage:Stage IIIA, dead, 56 days 123.9
TCGA-2Y-A9GX-01A 68 years, male, white, stage:Stage I, alive, 2442 days 123.4
TCGA-CC-A7IF-01A 59 years, male, asian, stage:Stage IIIA, dead, 649 days 122.9
TCGA-DD-AADS-01A 63 years, male, asian, stage:Stage I, alive, 474 days 122.1
TCGA-FV-A23B-01A 70 years, female, white, stage:Stage II, dead, 1852 days 121.6
TCGA-DD-AAEI-01A 72 years, male, asian, stage:Stage I, alive, 1531 days 121.5
TCGA-5C-A9VH-01A 70 years, male, white, stage:Stage I, alive, 322 days 121.1
TCGA-DD-AACC-01A 61 years, male, asian, stage:Stage I, dead, 1685 days 120.8
TCGA-CC-A5UC-01A 63 years, male, asian, stage:Stage IIIA, dead, 347 days 120.3
TCGA-DD-AACP-01A 64 years, male, asian, stage:Stage I, alive, 415 days 120.2
TCGA-ED-A459-01A 47 years, male, asian, stage:Stage II, alive, 910 days 120.1
TCGA-DD-A73G-01A 73 years, female, white, stage:Stage I, alive, 3478 days 118.4
TCGA-DD-AAE7-01A 72 years, male, asian, stage:Stage I, alive, 644 days 118.0
TCGA-DD-AACX-01A 66 years, male, asian, stage:Stage II, alive, 170 days 117.7
TCGA-DD-A73A-01A 71 years, male, white, stage:Stage I, alive, 728 days 117.6
TCGA-BC-A10W-01A 50 years, male, asian, stage:'--, dead, 91 days 117.1
TCGA-DD-AADC-01A 53 years, male, asian, stage:Stage I, dead, 425 days 117.1
TCGA-BC-A10Z-01A 62 years, female, white, stage:Stage I, dead, 34 days 115.0
TCGA-K7-A5RG-01A 66 years, male, black or african american, stage:Stage I, alive, 519 days 114.6
TCGA-DD-A4NO-01A 65 years, male, white, stage:Stage I, alive, 2245 days 113.7
TCGA-DD-AAEB-01A 60 years, male, asian, stage:Stage I, alive, 478 days 112.5
TCGA-DD-A114-01A 42 years, male, black or african american, stage:Stage II, dead, 1149 days 112.1
TCGA-CC-5258-01A 48 years, male, asian, stage:Stage II, dead, 129 days 110.4
TCGA-DD-AAC9-01A 51 years, male, asian, stage:Stage I, alive, 347 days 108.3
TCGA-DD-AAD1-01A 51 years, female, asian, stage:Stage I, alive, 564 days 108.1
TCGA-FV-A496-01A 84 years, female, white, stage:Stage I, alive, 10 days 107.5
TCGA-BC-A10Q-01A 72 years, female, white, stage:'--, dead, 1135 days 107.2
TCGA-DD-A1EI-01A 46 years, male, asian, stage:Stage I, alive, 183 days 105.7
TCGA-G3-A7M7-01A 65 years, male, white, stage:Stage I, alive, 361 days 105.0
TCGA-DD-AADB-01A 51 years, male, asian, stage:Stage I, alive, 1242 days 104.7
TCGA-DD-A39Y-01A 67 years, male, asian, stage:Stage I, dead, 171 days 104.7
TCGA-CC-A8HT-01A 74 years, male, asian, stage:Stage IIIA, dead, 140 days 104.7
TCGA-CC-5263-01A 35 years, male, asian, stage:Stage IIIA, dead, 129 days 104.5
TCGA-LG-A9QD-01A 68 years, male, white, stage:Stage IIIA, alive, 366 days 103.5
TCGA-DD-A4ND-01A 56 years, female, white, stage:Stage I, alive, 2746 days 103.3
TCGA-CC-A7IG-01A 47 years, male, asian, stage:Stage II, dead, 299 days 102.5
TCGA-DD-AACY-01A 61 years, male, asian, stage:Stage I, alive, 1450 days 102.2
TCGA-HP-A5MZ-01A 78 years, male, stage:Stage I, dead, 91 days 99.7
TCGA-DD-AAEA-01A 65 years, male, asian, stage:Stage I, alive, 575 days 99.1
TCGA-DD-AAD8-01A 73 years, female, asian, stage:Stage I, alive, 1219 days 98.2
TCGA-DD-AADU-01A 60 years, male, asian, stage:Stage II, alive, 554 days 97.6
TCGA-ES-A2HT-01A 54 years, male, black or african american, stage:Stage I, dead, 438 days 96.7
TCGA-ED-A7XP-01A 53 years, female, asian, stage:Stage II, alive, 400 days 96.2
TCGA-DD-A4NH-01A 65 years, female, white, stage:Stage IIIB, alive, 917 days 95.9
TCGA-DD-A3A4-01A 37 years, male, white, stage:Stage IIIA, dead, 612 days 95.4
TCGA-DD-AADO-01A 55 years, male, asian, stage:Stage I, alive, 453 days 95.0
TCGA-NI-A4U2-01A 71 years, male, white, stage:Stage IIIA, dead, 1791 days 94.9
TCGA-CC-A5UD-01A 45 years, male, asian, stage:Stage IIIA, dead, 304 days 94.8
TCGA-G3-A5SJ-01A 59 years, male, white, stage:Stage I, alive, 698 days 94.8
TCGA-BD-A3EP-01A 75 years, female, black or african american, stage:Stage I, alive, 409 days 93.6
TCGA-DD-A3A3-01A 45 years, male, asian, stage:Stage I, dead, 535 days 92.5
TCGA-CC-A7IJ-01A 56 years, male, asian, stage:Stage II, alive, 382 days 92.5
TCGA-DD-A39X-01A 78 years, female, white, stage:Stage I, dead, 1694 days 92.5
TCGA-DD-A4NB-01A 25 years, male, white, stage:Stage I, alive, 989 days 92.4
TCGA-DD-AACL-01A 66 years, female, asian, stage:Stage I, dead, 107 days 92.2
TCGA-BC-A216-01A 62 years, female, white, stage:Stage IIIA, alive, 1351 days 89.4
TCGA-RC-A6M6-01A 75 years, male, white, stage:Stage II, alive, 9 days 89.4
TCGA-ED-A82E-01A 60 years, female, asian, stage:Stage IIIA, alive, 408 days 89.3
TCGA-KR-A7K2-01A 64 years, male, white, stage:Stage I, alive, 829 days 88.9
TCGA-DD-AAD2-01A 66 years, male, asian, stage:Stage I, alive, 658 days 88.4
TCGA-UB-A7MA-01A 62 years, female, white, stage:Stage II, alive, 848 days 88.2
TCGA-G3-A7M9-01A 70 years, male, white, stage:Stage IIIB, dead, 56 days 88.0
TCGA-DD-AAE0-01A 45 years, female, asian, stage:Stage IIIA, alive, 555 days 87.3
TCGA-5C-AAPD-01A 61 years, male, asian, stage:Stage II, alive, 20 days 85.1
TCGA-KR-A7K7-01A 61 years, female, white, stage:Stage II, alive, 951 days 84.9
TCGA-BC-A69H-01A 64 years, male, white, stage:Stage II, alive, 444 days 84.8
TCGA-RC-A7SF-01A 66 years, male, asian, stage:Stage I, alive, 579 days 84.0
TCGA-RC-A7SH-01A 42 years, male, asian, stage:Stage II, alive, 468 days 83.8
TCGA-DD-A4NR-01A 85 years, female, white, stage:Stage I, dead, 9 days 83.6
TCGA-G3-AAV7-01A 38 years, male, asian, stage:Stage II, alive, 361 days 78.0
TCGA-EP-A3JL-01A 76 years, male, white, stage:Stage I, alive, 303 days 76.6
TCGA-GJ-A3OU-01A 59 years, male, white, stage:Stage I, alive, 879 days 75.8
TCGA-ED-A7PX-01A 48 years, female, asian, stage:Stage II, alive, 6 days 75.5
TCGA-2Y-A9GW-01A 64 years, male, white, stage:Stage I, dead, 1271 days 71.5
TCGA-CC-A123-01A 24 years, female, asian, stage:Stage IIIA, alive, 219 days 70.9
TCGA-CC-A3M9-01A 45 years, male, asian, stage:Stage IIIA, dead, 300 days 70.7
TCGA-CC-A1HT-01A 50 years, male, asian, stage:Stage IIIA, dead, 101 days 70.0
TCGA-DD-AAE6-01A 59 years, female, asian, stage:Stage I, alive, 141 days 69.5
TCGA-YA-A8S7-01A 68 years, male, white, stage:Stage IIIA, dead, 412 days 69.4
TCGA-G3-A7M6-01A 60 years, female, white, stage:Stage I, alive, 632 days 69.0
TCGA-DD-AACO-01A 40 years, male, asian, stage:Stage I, alive, 1876 days 68.5
TCGA-2Y-A9H0-01A 49 years, male, white, stage:Stage IIIA, alive, 3675 days 67.7
TCGA-2Y-A9H2-01A 64 years, female, white, stage:Stage I, alive, 1731 days 65.7
TCGA-CC-A3MA-01A 61 years, male, asian, stage:Stage IIIA, dead, 303 days 65.7
TCGA-CC-A8HV-01A 51 years, female, asian, stage:Stage II, dead, 279 days 65.5
TCGA-ED-A97K-01A 54 years, male, asian, stage:Stage IIIA, alive, 6 days 65.3
TCGA-BC-A112-01A 80 years, male, white, stage:'--, dead, 153 days 64.9
TCGA-ED-A66Y-01A 51 years, female, asian, stage:Stage IIIA, dead, 296 days 64.2
TCGA-WQ-A9G7-01A 71 years, female, white, stage:'--, alive, 30 days 64.0
TCGA-DD-AADN-01A 59 years, male, asian, stage:Stage I, alive, 898 days 64.0
TCGA-CC-A7IE-01A 57 years, male, asian, stage:Stage IIIA, dead, 217 days 63.6
TCGA-RC-A6M5-01A 20 years, female, white, stage:Stage IVA, alive, 15 days 62.3
TCGA-5R-AA1D-01A 17 years, female, white, stage:Stage IIIA, alive, 449 days 61.0
TCGA-DD-A4NA-01A 67 years, female, white, stage:Stage IIIC, alive, 1008 days 60.7
TCGA-DD-A3A7-01A 67 years, male, stage:Stage IIIB, dead, 419 days 60.2
TCGA-DD-AA3A-01A 81 years, female, white, stage:Stage I, dead, 410 days 60.2
TCGA-CC-5259-01A 60 years, female, asian, stage:Stage IIIC, alive, 250 days 60.0
TCGA-DD-AACZ-01A 63 years, female, asian, stage:Stage I, dead, 171 days 59.7
TCGA-DD-AAD6-01A 66 years, male, asian, stage:Stage IIIA, alive, 672 days 53.7
TCGA-K7-AAU7-01A 61 years, male, white, stage:Stage II, alive, 359 days 53.3
TCGA-FV-A3I0-01A 76 years, female, white, stage:Stage II, alive, 848 days 53.1
TCGA-DD-A1EC-01A 20 years, female, white, stage:Stage I, alive, 602 days 49.1
TCGA-EP-A2KA-01A 52 years, female, white, stage:Stage IIIA, dead, 627 days 48.3
TCGA-CC-A7II-01A 54 years, male, asian, stage:Stage IIIA, alive, 399 days 47.2
TCGA-DD-AAD5-01A 54 years, male, asian, stage:Stage I, alive, 1345 days 45.8
TCGA-CC-5260-01A 61 years, female, asian, stage:Stage IIIC, dead, 87 days 40.6
TCGA-DD-AAED-01A 51 years, male, asian, stage:Stage I, alive, 763 days 39.5
TCGA-MR-A8JO-01A 34 years, male, white, stage:Stage I, alive, 330 days 29.8
TCGA-WX-AA47-01A 33 years, female, white, stage:Stage IIIA, dead, 556 days 27.4
TCGA-DD-A3A6-01A 72 years, female, white, stage:Stage II, dead, 3258 days 20.4
TCGA-FV-A4ZP-01A 78 years, male, white, stage:Stage IIIA, dead, 2486 days 16.0
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

ECI2 is not prognostic in Liver Hepatocellular Carcinoma (validation)


Stage:
Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 111.56
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 220.9
Number of samples 231
Samples
Sample Description pTPM
DO48746 76 years, male, NA, stage:3, alive, 570 days 1695.2
DO23528 45 years, female, NA, stage:2, alive, 1020 days 739.1
DO48723 73 years, male, NA, stage:1, alive, 600 days 698.5
DO48759 73 years, male, NA, stage:3, alive, 720 days 676.9
DO45097 69 years, male, NA, stage:3, alive, 1620 days 669.3
DO50783 62 years, male, NA, stage:3, alive, 480 days 658.1
DO50839 47 years, female, NA, stage:3, alive, 330 days 582.3
DO50811 62 years, male, NA, stage:1, alive, 450 days 580.9
DO48677 58 years, male, NA, stage:3, alive, 1140 days 557.5
DO45227 57 years, female, NA, stage:2, alive, 1020 days 534.9
DO45175 74 years, male, NA, stage:2, alive, 1140 days 478.3
DO50802 49 years, male, NA, stage:2, alive, 930 days 466.7
DO45255 81 years, male, NA, stage:3, alive, 720 days 465.2
DO45179 78 years, female, NA, stage:2, alive, 600 days 460.7
DO23516 69 years, male, NA, stage:3, dead, 20 days 453.4
DO48695 77 years, male, NA, stage:2, alive, 720 days 452.0
DO50814 83 years, male, NA, stage:3, alive, 420 days 435.0
DO45129 61 years, male, NA, stage:3, alive, 1470 days 434.1
DO48672 81 years, male, NA, stage:2, alive, 450 days 416.7
DO23518 67 years, male, NA, stage:2, alive, 1320 days 409.2
DO23527 72 years, male, NA, stage:1, alive, 1050 days 406.6
DO23514 64 years, male, NA, stage:2, alive, 1290 days 402.8
DO45133 64 years, male, NA, stage:3, dead, 660 days 400.6
DO50817 75 years, male, NA, stage:2, alive, 390 days 385.0
DO50825 70 years, male, NA, stage:2, alive, 390 days 384.6
DO45237 58 years, male, NA, stage:2, alive, 900 days 374.0
DO23533 61 years, male, NA, stage:2, alive, 900 days 359.4
DO23550 69 years, male, NA, stage:1, alive, 990 days 359.0
DO48706 72 years, male, NA, stage:2, alive, 870 days 354.5
DO45123 78 years, female, NA, stage:2, dead, 570 days 353.8
DO23552 80 years, female, NA, stage:1, alive, 810 days 351.6
DO45187 32 years, female, NA, stage:1, alive, 1260 days 347.2
DO48721 58 years, female, NA, stage:1, alive, 900 days 346.3
DO50832 73 years, male, NA, stage:3, alive, 90 days 341.6
DO48741 64 years, male, NA, stage:3, alive, 240 days 329.7
DO50818 65 years, male, NA, stage:2, alive, 510 days 329.5
DO23537 79 years, male, NA, stage:2, dead, 900 days 326.2
DO45153 77 years, female, NA, stage:2, alive, 1380 days 324.9
DO45163 76 years, male, NA, stage:2, alive, 960 days 317.7
DO45096 69 years, male, NA, stage:2, dead, 1290 days 310.5
DO48757 68 years, female, NA, stage:3, alive, 480 days 309.1
DO48712 50 years, male, NA, stage:2, alive, 810 days 305.0
DO48742 76 years, male, NA, stage:2, alive, 600 days 304.2
DO48760 70 years, female, NA, stage:2, alive, 690 days 294.2
DO45281 83 years, male, NA, stage:4, alive, 750 days 292.5
DO45171 56 years, male, NA, stage:3, alive, 600 days 291.9
DO45119 74 years, male, NA, stage:3, dead, 510 days 289.4
DO23548 78 years, female, NA, stage:1, alive, 840 days 288.8
DO45177 81 years, female, NA, stage:3, alive, 1260 days 286.4
DO45117 73 years, female, NA, stage:2, dead, 1110 days 284.4
DO45233 83 years, male, NA, stage:3, alive, 900 days 284.4
DO50787 63 years, male, NA, stage:3, alive, 480 days 282.2
DO50776 75 years, male, NA, stage:1, alive, 690 days 281.8
DO23538 67 years, male, NA, stage:2, alive, 450 days 280.7
DO23531 78 years, female, NA, stage:3, alive, 900 days 277.7
DO50804 81 years, male, NA, stage:2, alive, 720 days 273.9
DO45199 86 years, female, NA, stage:2, alive, 1350 days 270.2
DO23536 56 years, male, NA, stage:2, alive, 930 days 270.0
DO45094 76 years, male, NA, stage:3, alive, 1650 days 269.7
DO45213 58 years, male, NA, stage:1, alive, 1200 days 269.3
DO45092 62 years, male, NA, stage:4, dead, 1200 days 268.5
DO45161 74 years, male, NA, stage:2, dead, 540 days 267.6
DO50808 68 years, male, NA, stage:2, alive, 570 days 264.6
DO45113 58 years, male, NA, stage:3, alive, 1560 days 257.8
DO45137 38 years, male, NA, stage:1, alive, 1320 days 257.3
DO45203 71 years, female, NA, stage:2, alive, 1170 days 256.8
DO48681 57 years, male, NA, stage:2, alive, 900 days 256.7
DO45247 31 years, female, NA, stage:2, alive, 210 days 256.3
DO45131 53 years, male, NA, stage:4, dead, 360 days 255.8
DO50822 66 years, male, NA, stage:2, alive, 510 days 253.7
DO50807 67 years, male, NA, stage:1, alive, 540 days 253.6
DO45261 74 years, male, NA, stage:3, alive, 990 days 252.8
DO23539 77 years, male, NA, stage:1, alive, 1110 days 252.2
DO23513 76 years, male, NA, stage:3, alive, 1200 days 251.8
DO50789 73 years, female, NA, stage:2, alive, 570 days 251.5
DO48743 69 years, female, NA, stage:2, alive, 570 days 250.2
DO50774 68 years, female, NA, stage:2, alive, 720 days 249.5
DO50798 77 years, male, NA, stage:3, dead, 30 days 247.9
DO50806 70 years, male, NA, stage:4, alive, 540 days 243.1
DO23509 60 years, male, NA, stage:3, dead, 780 days 240.8
DO45181 84 years, female, NA, stage:2, alive, 1200 days 240.8
DO48674 80 years, male, NA, stage:2, alive, 1260 days 238.2
DO45257 46 years, male, NA, stage:3, alive, 810 days 231.6
DO45219 78 years, male, NA, stage:2, alive, 1080 days 231.3
DO48725 66 years, male, NA, stage:1, alive, 780 days 229.4
DO48701 78 years, male, NA, stage:2, alive, 780 days 227.2
DO45207 68 years, male, NA, stage:1, alive, 1050 days 227.0
DO45121 61 years, male, NA, stage:3, alive, 1530 days 226.5
DO50809 56 years, male, NA, stage:3, dead, 720 days 223.9
DO45235 68 years, female, NA, stage:1, alive, 900 days 218.8
DO50793 76 years, male, NA, stage:4, alive, 540 days 218.4
DO45115 81 years, male, NA, stage:2, alive, 840 days 218.0
DO23529 72 years, male, NA, stage:4, alive, 930 days 216.2
DO48716 71 years, male, NA, stage:2, alive, 720 days 213.4
DO23540 73 years, male, NA, stage:1, alive, 750 days 212.4
DO227643 79 years, male, NA, stage:2, alive, 1260 days 209.2
DO45125 58 years, male, NA, stage:3, alive, 1680 days 209.1
DO45139 63 years, male, NA, stage:3, alive, 1320 days 206.6
DO23508 79 years, female, NA, stage:2, alive, 390 days 206.1
DO45173 63 years, male, NA, stage:3, alive, 1170 days 205.4
DO45223 67 years, male, NA, stage:4, alive, 1020 days 204.9
DO48736 76 years, female, NA, stage:1, alive, 600 days 202.7
DO45243 74 years, female, NA, stage:3, alive, 930 days 202.0
DO50799 66 years, female, NA, stage:2, alive, 540 days 201.8
DO50840 49 years, male, NA, stage:2, alive, 330 days 195.9
DO48751 68 years, male, NA, stage:2, dead, 480 days 195.5
DO48719 80 years, male, NA, stage:2, alive, 690 days 195.3
DO45091 56 years, male, NA, stage:2, dead, 1320 days 194.8
DO45253 50 years, male, NA, stage:2, alive, 870 days 194.4
DO23534 60 years, male, NA, stage:2, alive, 840 days 193.9
DO48715 58 years, female, NA, stage:2, dead, 690 days 193.3
DO50819 72 years, female, NA, stage:2, alive, 510 days 193.1
DO45099 46 years, male, NA, stage:3, alive, 1590 days 193.0
DO45201 49 years, male, NA, stage:1, alive, 900 days 192.4
DO50820 77 years, female, NA, stage:3, alive, 510 days 189.4
DO48761 55 years, male, NA, stage:2, alive, 870 days 188.7
DO50857 72 years, male, NA, stage:2, alive, 210 days 188.1
DO50855 47 years, male, NA, stage:2, alive, 570 days 187.6
DO45143 69 years, male, NA, stage:3, alive, 1290 days 187.3
DO45183 72 years, female, NA, stage:2, dead, 570 days 184.8
DO45149 70 years, female, NA, stage:2, alive, 1260 days 181.5
DO23542 66 years, male, NA, stage:3, alive, 960 days 180.2
DO45193 68 years, female, NA, stage:4, dead, 120 days 180.2
DO50813 56 years, male, NA, stage:2, alive, 420 days 179.6
DO50844 75 years, male, NA, stage:4, alive, 300 days 176.8
DO45221 75 years, female, NA, stage:4, dead, 390 days 175.9
DO45159 65 years, male, NA, stage:3, alive, 1470 days 175.7
DO48697 64 years, female, NA, stage:2, dead, 810 days 174.6
DO50785 37 years, male, NA, stage:4, dead, 90 days 171.5
DO50859 77 years, male, NA, stage:2, alive, 180 days 170.6
DO23532 71 years, female, NA, stage:1, alive, 960 days 168.2
DO45229 74 years, male, NA, stage:1, alive, 990 days 166.3
DO45225 69 years, male, NA, stage:1, alive, 1050 days 165.8
DO50791 79 years, female, NA, stage:1, dead, 480 days 164.6
DO48693 71 years, male, NA, stage:2, alive, 900 days 164.2
DO23512 60 years, male, NA, stage:1, alive, 1260 days 164.1
DO45141 73 years, male, NA, stage:2, alive, 1320 days 163.5
DO50850 74 years, male, NA, stage:3, alive, 720 days 161.4
DO48727 81 years, female, NA, stage:2, dead, 390 days 157.8
DO45165 75 years, male, NA, stage:2, alive, 690 days 155.8
DO23535 67 years, male, NA, stage:1, alive, 960 days 155.6
DO45195 62 years, male, NA, stage:1, alive, 390 days 155.4
DO48679 72 years, male, NA, stage:2, alive, 1200 days 155.3
DO23524 71 years, female, NA, stage:2, alive, 1050 days 155.1
DO23515 71 years, male, NA, stage:2, alive, 1230 days 152.1
DO23543 63 years, male, NA, stage:2, alive, 1020 days 151.8
DO45109 63 years, male, NA, stage:2, alive, 1590 days 150.9
DO50829 78 years, male, NA, stage:3, alive, 570 days 150.6
DO45215 65 years, male, NA, stage:2, alive, 1170 days 148.3
DO23541 65 years, male, NA, stage:2, alive, 930 days 148.2
DO23517 62 years, male, NA, stage:2, alive, 1200 days 147.0
DO45107 63 years, female, NA, stage:2, alive, 1710 days 146.3
DO45259 65 years, male, NA, stage:3, alive, 330 days 146.2
DO23521 63 years, male, NA, stage:3, alive, 1110 days 146.1
DO45191 61 years, female, NA, stage:2, alive, 1200 days 145.3
DO45267 73 years, male, NA, stage:3, dead, 570 days 144.9
DO48704 68 years, female, NA, stage:3, alive, 750 days 144.7
DO45231 84 years, male, NA, stage:2, alive, 930 days 143.8
DO45197 51 years, male, NA, stage:2, alive, 1170 days 142.8
DO45185 89 years, male, NA, stage:2, alive, 600 days 141.6
DO45103 47 years, male, NA, stage:3, alive, 450 days 141.4
DO45135 77 years, male, NA, stage:1, alive, 1410 days 141.0
DO48717 54 years, male, NA, stage:4, dead, 180 days 140.9
DO50778 60 years, male, NA, stage:4, alive, 630 days 140.9
DO48737 52 years, male, NA, stage:1, alive, 720 days 137.8
DO45095 66 years, male, NA, stage:2, alive, 1620 days 134.1
DO23525 71 years, male, NA, stage:4, alive, 1050 days 132.2
DO45189 85 years, female, NA, stage:2, alive, 1200 days 131.1
DO23510 80 years, female, NA, stage:2, alive, 870 days 130.9
DO48732 73 years, male, NA, stage:3, alive, 630 days 130.8
DO45111 74 years, male, NA, stage:2, alive, 1590 days 129.5
DO45155 69 years, male, NA, stage:2, alive, 2160 days 128.5
DO23551 73 years, male, NA, stage:3, dead, 150 days 126.7
DO48733 72 years, male, NA, stage:2, alive, 600 days 126.2
DO45217 69 years, female, NA, stage:3, dead, 270 days 125.5
DO45169 74 years, male, NA, stage:3, alive, 1350 days 125.4
DO48700 78 years, female, NA, stage:2, alive, 810 days 124.6
DO48720 62 years, female, NA, stage:2, alive, 570 days 120.9
DO48728 74 years, female, NA, stage:2, alive, 150 days 116.8
DO23544 67 years, male, NA, stage:2, alive, 960 days 114.6
DO45239 42 years, male, NA, stage:2, alive, 870 days 112.7
DO23526 66 years, male, NA, stage:3, alive, 1050 days 111.6
DO45093 71 years, male, NA, stage:2, dead, 720 days 110.8
DO227801 77 years, female, NA, stage:1, alive, 660 days 110.4
DO50803 62 years, female, NA, stage:1, alive, 540 days 110.1
DO50816 63 years, male, NA, stage:2, alive, 390 days 109.2
DO48682 72 years, female, NA, stage:3, dead, 120 days 109.0
DO45157 62 years, male, NA, stage:2, alive, 1980 days 108.3
DO23549 74 years, male, NA, stage:3, alive, 990 days 106.8
DO45263 67 years, male, NA, stage:3, dead, 270 days 102.3
DO50805 72 years, male, NA, stage:2, alive, 690 days 101.2
DO23545 67 years, male, NA, stage:2, dead, 570 days 100.9
DO45307 54 years, female, NA, stage:4, dead, 240 days 100.6
DO45273 62 years, male, NA, stage:2, alive, 480 days 99.9
DO45101 63 years, male, NA, stage:2, alive, 1680 days 98.1
DO48730 73 years, female, NA, stage:2, alive, 630 days 97.9
DO50800 74 years, male, NA, stage:2, alive, 510 days 96.3
DO45167 67 years, male, NA, stage:2, dead, 1440 days 96.2
DO45275 65 years, male, NA, stage:3, dead, 10 days 95.8
DO45205 67 years, female, NA, stage:2, dead, 90 days 95.7
DO23519 65 years, male, NA, stage:3, alive, 630 days 95.1
DO45303 62 years, female, NA, stage:3, alive, 990 days 93.0
DO23530 53 years, male, NA, stage:4, dead, 180 days 93.0
DO48747 62 years, male, NA, stage:3, alive, 540 days 92.8
DO23546 63 years, male, NA, stage:2, alive, 1050 days 91.7
DO45241 49 years, male, NA, stage:1, alive, 1080 days 88.6
DO45277 64 years, male, NA, stage:3, alive, 600 days 84.1
DO45269 59 years, male, NA, stage:3, alive, 750 days 81.4
DO50845 72 years, male, NA, stage:3, alive, 210 days 80.1
DO45265 73 years, male, NA, stage:3, alive, 1020 days 79.5
DO45283 60 years, male, NA, stage:3, alive, 510 days 76.0
DO45249 57 years, male, NA, stage:1, alive, 630 days 69.7
DO45305 66 years, male, NA, stage:4, alive, 300 days 68.7
DO50815 62 years, male, NA, stage:3, alive, 150 days 68.0
DO45127 73 years, male, NA, stage:3, dead, 420 days 61.3
DO45105 61 years, male, NA, stage:1, alive, 1680 days 59.8
DO45289 78 years, female, NA, stage:3, alive, 360 days 58.7
DO23547 74 years, male, NA, stage:1, alive, 1020 days 55.2
DO23511 83 years, female, NA, stage:3, dead, 180 days 54.0
DO45251 57 years, female, NA, stage:2, alive, 900 days 53.2
DO45145 78 years, male, NA, stage:3, dead, 60 days 52.4
DO45297 61 years, female, NA, stage:4, dead, 1260 days 51.9
DO45299 70 years, female, NA, stage:1, alive, 1440 days 51.2
DO45285 59 years, male, NA, stage:3, alive, 480 days 46.9
DO45209 70 years, male, NA, stage:4, alive, 1350 days 45.8
DO45287 74 years, male, NA, stage:1, alive, 390 days 44.8
DO23523 52 years, male, NA, stage:3, alive, 1080 days 42.3
DO45279 67 years, male, NA, stage:3, alive, 1290 days 34.0
DO45245 75 years, female, NA, stage:2, dead, 240 days 31.6
DO45301 56 years, male, NA, stage:2, dead, 1440 days 24.2
DO45211 76 years, male, NA, stage:3, alive, 240 days 23.8
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples 330
Samples
Sample ID Sample type nRPX
911 Tumor 1.2
695 Tumor 1.1
571 Tumor 1.1
1041 Tumor 1.1
261 Tumor 0.8
615 Tumor 0.7
341 Tumor 0.6
452 Normal 0.6
123 Tumor 0.6
1027 Tumor 0.6
981 Tumor 0.6
627 Tumor 0.6
465 Tumor 0.6
477 Tumor 0.6
977 Tumor 0.6
742 Normal 0.6
915 Tumor 0.5
878 Normal 0.5
433 Tumor 0.5
635 Tumor 0.5
128 Normal 0.5
741 Tumor 0.5
436 Normal 0.5
746 Normal 0.5
938 Normal 0.5
171 Tumor 0.5
513 Tumor 0.4
112 Tumor 0.4
342 Normal 0.4
363 Tumor 0.4
127 Tumor 0.4
412 Normal 0.4
423 Tumor 0.4
954 Normal 0.4
867 Tumor 0.4
484 Normal 0.4
196 Normal 0.4
824 Normal 0.4
137 Tumor 0.4
862 Normal 0.4
132 Normal 0.4
114 Normal 0.4
744 Normal 0.4
922 Normal 0.4
738 Normal 0.3
356 Normal 0.3
698 Normal 0.3
534 Normal 0.3
426 Normal 0.3
358 Normal 0.3
538 Normal 0.3
517 Tumor 0.3
222 Normal 0.3
481 Tumor 0.3
1022 Normal 0.3
861 Tumor 0.3
231 Tumor 0.3
648 Normal 0.3
448 Normal 0.3
1025 Tumor 0.3
272 Normal 0.3
298 Normal 0.3
186 Normal 0.3
874 Normal 0.3
662 Normal 0.3
422 Normal 0.3
526 Normal 0.3
328 Normal 0.3
1016 Normal 0.3
111 Normal 0.3
354 Normal 0.3
376 Normal 0.3
494 Normal 0.2
462 Normal 0.2
816 Normal 0.2
786 Normal 0.2
696 Normal 0.2
636 Normal 0.2
353 Tumor 0.2
414 Normal 0.2
546 Normal 0.2
286 Normal 0.2
686 Normal 0.2
515 Tumor 0.2
227 Tumor 0.2
314 Normal 0.2
944 Normal 0.2
642 Normal 0.2
228 Normal 0.2
618 Normal 0.2
136 Normal 0.2
364 Normal 0.2
864 Normal 0.2
464 Normal 0.2
214 Normal 0.2
955 Tumor 0.2
866 Normal 0.2
482 Normal 0.2
148 Normal 0.2
416 Normal 0.2
516 Normal 0.2
472 Normal 0.2
568 Normal 0.2
388 Normal 0.2
554 Normal 0.2
424 Normal 0.2
124 Normal 0.2
1032 Normal 0.2
723 Tumor 0.2
785 Tumor 0.2
858 Normal 0.2
431 Tumor 0.2
728 Normal 0.2
924 Normal 0.2
914 Normal 0.2
411 Tumor 0.2
572 Normal 0.2
868 Normal 0.2
232 Normal 0.2
564 Normal 0.2
488 Normal 0.2
474 Normal 0.2
952 Normal 0.2
162 Normal 0.1
1042 Normal 0.1
722 Normal 0.1
982 Normal 0.1
466 Normal 0.1
755 Tumor 0.1
968 Normal 0.1
882 Normal 0.1
553 Tumor 0.1
138 Normal 0.1
146 Normal 0.1
262 Normal 0.1
925 Tumor 0.1
563 Tumor 0.1
1026 Normal 0.1
976 Normal 0.1
172 Normal 0.1
1014 Normal 0.1
716 Normal 0.1
142 Normal 0.1
1028 Normal 0.1
714 Normal 0.1
394 Normal 0.1
258 Normal 0.1
1013 Tumor 0.1
1046 Normal 0.1
918 Normal 0.1
558 Normal 0.1
366 Normal 0.1
432 Normal 0.1
557 Tumor 0.0
344 Normal 0.0
212 Normal 0.0
664 Normal 0.0
727 Tumor 0.0
574 Normal 0.0
778 Normal 0.0
616 Normal 0.0
514 Normal 0.0
978 Normal 0.0
478 Normal 0.0
852 Normal 0.0
312 Normal 0.0
218 Normal 0.0
818 Normal 0.0
332 Normal 0.0
428 Normal 0.0
392 Normal 0.0
956 Normal 0.0
224 Normal 0.0
756 Normal 0.0
278 Normal 0.0
456 Normal 0.0
912 Normal 0.0
937 Tumor 0.0
468 Normal 0.0
926 Normal 0.0
362 Normal 0.0
966 Normal 0.0
145 Tumor 0.0
313 Tumor 0.0
518 Normal -0.1
268 Normal -0.1
1044 Normal -0.1
446 Normal -0.1
884 Normal -0.1
284 Normal -0.1
745 Tumor -0.1
916 Normal -0.1
434 Normal -0.1
393 Tumor -0.1
396 Normal -0.1
685 Tumor -0.1
984 Normal -0.1
492 Normal -0.1
528 Normal -0.1
1015 Tumor -0.1
715 Tumor -0.1
1045 Tumor -0.1
857 Tumor -0.1
666 Normal -0.1
443 Tumor -0.1
188 Normal -0.1
361 Tumor -0.1
352 Normal -0.1
257 Tumor -0.1
958 Normal -0.1
365 Tumor -0.1
195 Tumor -0.1
647 Tumor -0.1
357 Tumor -0.1
126 Normal -0.1
823 Tumor -0.2
147 Tumor -0.2
141 Tumor -0.2
386 Normal -0.2
415 Tumor -0.2
524 Normal -0.2
873 Tumor -0.2
435 Tumor -0.2
445 Tumor -0.2
461 Tumor -0.2
1031 Tumor -0.2
451 Tumor -0.2
267 Tumor -0.2
628 Normal -0.2
368 Normal -0.2
1043 Tumor -0.2
957 Tumor -0.2
185 Tumor -0.2
493 Tumor -0.2
271 Tumor -0.2
523 Tumor -0.3
663 Tumor -0.3
964 Normal -0.3
444 Normal -0.3
877 Tumor -0.3
421 Tumor -0.3
113 Tumor -0.3
721 Tumor -0.3
135 Tumor -0.3
192 Normal -0.3
191 Tumor -0.3
777 Tumor -0.3
921 Tumor -0.4
923 Tumor -0.4
473 Tumor -0.4
498 Normal -0.4
384 Normal -0.4
487 Tumor -0.4
355 Tumor -0.4
213 Tumor -0.4
483 Tumor -0.4
883 Tumor -0.4
187 Tumor -0.4
672 Normal -0.5
161 Tumor -0.5
221 Tumor -0.5
471 Tumor -0.5
217 Tumor -0.5
865 Tumor -0.5
863 Tumor -0.5
327 Tumor -0.5
277 Tumor -0.5
536 Normal -0.5
1021 Tumor -0.6
881 Tumor -0.6
533 Tumor -0.6
425 Tumor -0.6
953 Tumor -0.6
737 Tumor -0.6
951 Tumor -0.7
387 Tumor -0.7
713 Tumor -0.7
455 Tumor -0.7
297 Tumor -0.7
913 Tumor -0.7
491 Tumor -0.7
567 Tumor -0.7
463 Tumor -0.7
641 Tumor -0.7
665 Tumor -0.7
943 Tumor -0.7
527 Tumor -0.7
967 Tumor -0.7
447 Tumor -0.8
131 Tumor -0.8
817 Tumor -0.8
814 Normal -0.8
573 Tumor -0.8
223 Tumor -0.8
617 Tumor -0.9
391 Tumor -0.9
525 Tumor -1.0
467 Tumor -1.0
537 Tumor -1.0
975 Tumor -1.0
413 Tumor -1.0
125 Tumor -1.1
851 Tumor -1.1
963 Tumor -1.1
697 Tumor -1.1
743 Tumor -1.1
815 Tumor -1.2
965 Tumor -1.2
497 Tumor -1.2
813 Tumor -1.2
367 Tumor -1.2
375 Tumor -1.2
917 Tumor -1.3
671 Tumor -1.3
331 Tumor -1.3
545 Tumor -1.3
383 Tumor -1.3
427 Tumor -1.4
285 Tumor -1.4
343 Tumor -1.4
983 Tumor -1.5
395 Tumor -1.5
351 Tumor -1.5
311 Tumor -1.5
724 Normal -1.6
385 Tumor -1.6
283 Tumor -1.8
535 Tumor -1.9
211 Tumor -2.1
661 Tumor -2.3
Show allShow less
LIVER CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA022130

Antibody HPA031626
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS

Contact

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