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SYCP1
HPA
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  • SYCP1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SYCP1
Synonyms CT8, HOM-TES-14, SCP1
Gene descriptioni

Full gene name according to HGNC.

Synaptonemal complex protein 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p13.2
Chromosome location (bp) 114854863 - 114995370
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000198765 (version 109)
Entrez gene 6847
HGNC HGNC:11487
UniProt Q15431 (UniProt - Evidence at protein level)
neXtProt NX_Q15431
GeneCards SYCP1
Antibodypedia SYCP1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Major component of the transverse filaments of synaptonemal complexes, formed between homologous chromosomes during meiotic prophase. Required for normal assembly of the central element of the synaptonemal complexes. Required for normal centromere pairing during meiosis. Required for normal meiotic chromosome synapsis during oocyte and spermatocyte development and for normal male and female fertility.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Cell cycle, Cell division, Meiosis
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables double-stranded DNA binding activity. Involved in protein homotetramerization. Predicted to be located in synaptonemal complex. Predicted to be active in central element; male germ cell nucleus; and transverse filament. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SYCP1-201
ENSP00000358531
ENST00000369518
Q15431
[Direct mapping] Synaptonemal complex protein 1
Show all
A0A024R0I2
[Target identity:100%; Query identity:100%] Synaptonemal complex protein 1, isoform CRA_b; Testicular tissue protein Li 191
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000711 [meiotic DNA repair synthesis]
GO:0000775 [chromosome, centromeric region]
GO:0000795 [synaptonemal complex]
GO:0000801 [central element]
GO:0000802 [transverse filament]
GO:0001673 [male germ cell nucleus]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0007049 [cell cycle]
GO:0007129 [homologous chromosome pairing at meiosis]
GO:0007130 [synaptonemal complex assembly]
GO:0007131 [reciprocal meiotic recombination]
GO:0007283 [spermatogenesis]
GO:0051026 [chiasma assembly]
GO:0051289 [protein homotetramerization]
GO:0051301 [cell division]
GO:0051321 [meiotic cell cycle]
GO:0051878 [lateral element assembly]
Show all
976 aa
114.2 kDa
No 0
SYCP1-202
ENSP00000358535
ENST00000369522
Q15431
[Direct mapping] Synaptonemal complex protein 1
Show all
A0A024R0I2
[Target identity:100%; Query identity:100%] Synaptonemal complex protein 1, isoform CRA_b; Testicular tissue protein Li 191
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000711 [meiotic DNA repair synthesis]
GO:0000775 [chromosome, centromeric region]
GO:0000794 [condensed nuclear chromosome]
GO:0000795 [synaptonemal complex]
GO:0000801 [central element]
GO:0000802 [transverse filament]
GO:0001673 [male germ cell nucleus]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0007049 [cell cycle]
GO:0007129 [homologous chromosome pairing at meiosis]
GO:0007130 [synaptonemal complex assembly]
GO:0007131 [reciprocal meiotic recombination]
GO:0007283 [spermatogenesis]
GO:0032880 [regulation of protein localization]
GO:0035092 [sperm DNA condensation]
GO:0051026 [chiasma assembly]
GO:0051289 [protein homotetramerization]
GO:0051301 [cell division]
GO:0051321 [meiotic cell cycle]
GO:0051878 [lateral element assembly]
Show all
976 aa
114.2 kDa
No 0
SYCP1-203
ENSP00000410011
ENST00000455987
Q5VXJ5
[Direct mapping] Synaptonemal complex protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0000795 [synaptonemal complex]
GO:0007130 [synaptonemal complex assembly]
Show all
792 aa
93.1 kDa
No 0
SYCP1-209
ENSP00000482532
ENST00000613524
A0A087WZC3
[Direct mapping] Synaptonemal complex protein 1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0000795 [synaptonemal complex]
GO:0007130 [synaptonemal complex assembly]
Show all
951 aa
111.2 kDa
No 0
SYCP1-210
ENSP00000480997
ENST00000618516
Q15431
[Direct mapping] Synaptonemal complex protein 1
Show all
A0A024R0I2
[Target identity:100%; Query identity:100%] Synaptonemal complex protein 1, isoform CRA_b; Testicular tissue protein Li 191
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0000711 [meiotic DNA repair synthesis]
GO:0000775 [chromosome, centromeric region]
GO:0000795 [synaptonemal complex]
GO:0000801 [central element]
GO:0000802 [transverse filament]
GO:0001673 [male germ cell nucleus]
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0005634 [nucleus]
GO:0005694 [chromosome]
GO:0007049 [cell cycle]
GO:0007129 [homologous chromosome pairing at meiosis]
GO:0007130 [synaptonemal complex assembly]
GO:0007131 [reciprocal meiotic recombination]
GO:0007283 [spermatogenesis]
GO:0051026 [chiasma assembly]
GO:0051289 [protein homotetramerization]
GO:0051301 [cell division]
GO:0051321 [meiotic cell cycle]
GO:0051878 [lateral element assembly]
Show all
976 aa
114.2 kDa
No 0

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