We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MT-ND5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • MT-ND5
BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:28666.5 nTPM
Pig:9640.4 nTPM
Mouse:5353.8 nTPM
Allen mouse:18.8 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28666.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 20566.7
2497 Male, age 66, unknown 24059.2
2396 Male, age 61, right hemisphere 20144.5
2032 Female, age 42, unknown 17496.6
Centromedial thalamic nucleus
nTPM: 20121.2
2279 Female, age 85, left hemisphere 22273.6
2401 Male, age 76, right hemisphere 17968.7
Habenula
nTPM: 13329.3
2276 Male, age 66, unknown 19773.6
1957 Male, age 80, both hemispheres 13240.6
2252 Male, age 62, unknown 10291.0
2203 Male, age 61, left hemisphere 10012.0
Lateral geniculate body
nTPM: 21625.8
2857 Male, age 74, right hemisphere 40225.0
2659 Male, age 66, unknown 34548.0
2575 Female, age 94, right hemisphere 24064.1
2399 Male, age 61, left hemisphere 21081.2
2035 Female, age 72, unknown 16867.5
1953 Male, age 62, unknown 16287.8
2841 Male, age 80, both hemispheres 12295.4
2106 Female, age 67, right hemisphere 7637.6
Lateral thalamic nuclei
nTPM: 22295.0
2661 Female, age 72, unknown 47620.5
1903 Male, age 76, left hemisphere 21856.1
2573 Female, age 94, left hemisphere 20022.4
2577 Male, age 74, both hemispheres 17019.2
2765 Female, age 67, both hemispheres 4956.7
Medial dorsal thalamic nucleus
nTPM: 21377.0
2572 Female, age 94, right hemisphere 46128.8
2660 Female, age 72, unknown 33998.9
2576 Male, age 74, both hemispheres 25132.7
2498 Male, age 66, unknown 24795.9
2492 Male, age 75, right hemisphere 22688.2
2283 Male, age 80, right hemisphere 20487.6
2402 Female, age 67, both hemispheres 19493.8
1859 Male, age 76, both hemispheres 18283.7
2026 Male, age 62, unknown 17686.8
1930 Female, age 42, unknown 15124.3
1810 Male, age 48, unknown 14260.6
2039 Female, age 72, unknown 13391.0
1971 Male, age 61, right hemisphere 6428.4
Medial geniculate body
nTPM: 28061.7
2207 Male, age 80, right hemisphere 35483.8
2571 Male, age 75, right hemisphere 32351.6
2657 Male, age 74, right hemisphere 31090.9
2217 Female, age 72, unknown 30693.5
2650 Female, age 94, left hemisphere 29180.7
1811 Female, age 42, unknown 22766.4
2049 Male, age 76, both hemispheres 14865.1
Nucleus reuniens
nTPM: 17176.5
2210 Female, age 85, left hemisphere 23692.7
2205 Male, age 80, left hemisphere 20042.9
2212 Female, age 67, left hemisphere 7793.7
Nucleus rhomboideus
nTPM: 22386.8
2280 Female, age 85, left hemisphere 35317.6
2206 Male, age 80, both hemispheres 22461.0
2213 Female, age 67, left hemisphere 9381.6
Posterior thalamic nucleus
nTPM: 28666.5
2655 Male, age 74, right hemisphere 41169.2
2649 Female, age 94, both hemispheres 31457.2
2495 Female, age 67, right hemisphere 29756.5
2266 Male, age 76, right hemisphere 12283.2
Pulvinar
nTPM: 23991.8
2724 Male, age 74, right hemisphere 56521.9
2582 Female, age 72, unknown 37701.2
2398 Male, age 61, left hemisphere 23902.9
2214 Male, age 76, right hemisphere 22499.8
2499 Male, age 66, unknown 20766.8
2496 Female, age 67, right hemisphere 20545.5
1929 Male, age 48, unknown 19707.0
1899 Female, age 42, unknown 14303.1
1932 Male, age 80, right hemisphere 13175.7
1972 Male, age 62, unknown 10793.7
Subthalamic nucleus
nTPM: 16781.5
2658 Male, age 74, both hemispheres 25767.7
2216 Male, age 48, unknown 22040.2
2282 Male, age 61, both hemispheres 19853.9
2406 Female, age 72, unknown 17053.2
2779 Female, age 42, unknown 16811.2
2124 Male, age 62, unknown 12993.2
2275 Male, age 66, unknown 11117.1
2056 Female, age 72, unknown 8615.4
Ventral posterolateral thalamic nucleus
nTPM: 22683.9
2581 Female, age 72, unknown 45731.4
2570 Male, age 75, right hemisphere 25472.0
2578 Male, age 74, both hemispheres 18138.6
2397 Male, age 61, right hemisphere 17545.8
2740 Male, age 76, right hemisphere 15203.8
2197 Male, age 80, both hemispheres 14011.6
Ventral posteromedial thalamic nucleus
nTPM: 15280.8
2653 Male, age 74, both hemispheres 18712.7
2758 Male, age 80, both hemispheres 16122.2
2127 Male, age 76, right hemisphere 14532.2
2281 Male, age 75, right hemisphere 14380.3
2202 Male, age 61, left hemisphere 12656.8
Ventral thalamic nuclei
nTPM: 22679.3
2858 Female, age 72, unknown 40785.7
2204 Male, age 80, both hemispheres 32127.2
2580 Male, age 66, unknown 26203.5
1845 Male, age 48, unknown 22553.9
2285 Male, age 62, unknown 18569.4
1912 Female, age 42, unknown 17896.1
1860 Male, age 76, both hemispheres 17158.4
2652 Male, age 74, left hemisphere 15616.3
2291 Female, age 72, unknown 13202.9
Zona incerta
nTPM: 20605.5
2663 Female, age 72, unknown 31639.8
2208 Male, age 80, right hemisphere 23695.4
2403 Male, age 62, unknown 21971.8
2822 Male, age 74, right hemisphere 19714.2
2215 Male, age 66, unknown 6006.4

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9640.4
Pig sample Sample description nTPM
Thalamus
nTPM: 9640.4
Samples: 4

Max nTPM: 13304.7
Min nTPM: 5843.6
Sample A Female 13304.7
Sample B Female 7250.7
Sample C Male 12162.5
Sample D Male 5843.6

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5353.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 5353.9
Samples: 4

Max nTPM: 5795.8
Min nTPM: 5010.7
Sample A Male 5532.4
Sample B Male 5076.5
Sample C Female 5795.8
Sample D Female 5010.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 18.8
75080269 Antisense, RP_060412_06_H09, Mouse strain C57BL/6J (56 days, male) 19.1
73906215 Antisense, RP_051212_04_H07, Mouse strain C57BL/6J (56 days, male) 18.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org