Expression of MT-ND5 in testis cancer - The Human Protein Atlas

TESTICULAR GERM CELL TUMOR (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

MT-ND5 is not prognostic in Testicular Germ Cell Tumor (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 2277.88

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

1902.2

Number of samples

133

Samples

Sample	Description	pTPM
TCGA-ZM-AA06-01A	45 years, male, white, stage:Stage IB, alive, 1498 days	11791.2
TCGA-ZM-AA05-01A	36 years, male, white, stage:Stage IIC, alive, 1126 days	11282.3
TCGA-ZM-AA0E-01A	39 years, male, white, stage:Stage IA, alive, 811 days	10025.5
TCGA-XE-AAOL-01A	38 years, male, black or african american, stage:Stage I, alive, 13 days	9510.8
TCGA-XE-AAO6-01A	47 years, male, white, stage:Stage IA, alive, 240 days	7793.8
TCGA-ZM-AA0H-01A	50 years, male, white, stage:Stage IS, alive, 1736 days	6988.2
TCGA-ZM-AA0F-01A	35 years, male, white, stage:Stage IA, alive, 681 days	6763.1
TCGA-ZM-AA0N-01A	44 years, male, white, stage:Stage IB, alive, 634 days	5061.1
TCGA-S6-A8JX-01A	27 years, male, white, stage:Stage IB, alive, 552 days	4966.0
TCGA-ZM-AA0D-01A	34 years, male, white, stage:Stage IA, alive, 848 days	4784.2
TCGA-2G-AAG6-01A	24 years, male, white, stage:Stage IS, alive, 2231 days	4533.0
TCGA-ZM-AA0B-01A	32 years, male, white, stage:Stage IA, alive, 838 days	4162.9
TCGA-YU-A90S-01A	26 years, male, white, stage:Stage IA, alive, 971 days	4035.7
TCGA-XE-AAO4-01A	40 years, male, white, stage:Stage IA, alive, 367 days	3978.1
TCGA-2G-AAHG-01A	25 years, male, white, stage:Stage I, alive, 1819 days	3642.9
TCGA-XY-A89B-01A	35 years, male, white, stage:Stage IA, alive, 471 days	3215.0
TCGA-VF-A8AB-01A	31 years, male, black or african american, stage:Stage IA, alive, 760 days	3206.9
TCGA-YU-A94I-01A	66 years, male, stage:Stage IA, alive, 536 days	3056.9
TCGA-2G-AAFE-01A	37 years, male, white, stage:Stage IIA, alive, 4702 days	2727.0
TCGA-WZ-A7V4-01A	28 years, male, white, stage:Stage I, alive, 894 days	2673.2
TCGA-S6-A8JY-01A	27 years, male, white, stage:Stage IS, alive, 278 days	2550.4
TCGA-2G-AAGG-01A	20 years, male, white, stage:Stage IIIC, alive, 2611 days	2435.1
TCGA-YU-A912-01A	34 years, male, black or african american, stage:Stage IIIC, alive, 866 days	2415.8
TCGA-2G-AAH3-01A	20 years, male, white, stage:Stage I, alive, 1822 days	2319.2
TCGA-YU-A90Y-01A	23 years, male, black or african american, stage:Stage IIIC, dead, 17 days	2296.6
TCGA-YU-A90W-01A	45 years, male, white, stage:Stage IA, alive, 1113 days	2292.0
TCGA-2G-AAKM-01A	14 years, male, white, stage:Stage II, dead, 6972 days	2281.4
TCGA-2G-AAH2-01A	20 years, male, white, stage:Stage IS, alive, 6060 days	2277.9
TCGA-2G-AAG5-01A	36 years, male, white, stage:Stage IS, alive, 2299 days	2273.0
TCGA-XE-AAOC-01A	31 years, male, white, stage:Stage IA, alive, 270 days	2240.4
TCGA-2G-AAGY-01A	28 years, male, white, stage:Stage IS, alive, 5329 days	2228.5
TCGA-YU-A90Q-01A	21 years, male, stage:Stage IB, alive, 1964 days	2185.2
TCGA-2G-AAGV-01A	23 years, male, white, stage:'--, alive, 4527 days	2155.0
TCGA-2G-AAG3-01A	53 years, male, white, stage:Stage IS, alive, 1593 days	2131.8
TCGA-XE-AAOF-01A	50 years, male, asian, stage:Stage IA, alive, 1268 days	2049.4
TCGA-2G-AAHC-01A	33 years, male, white, stage:Stage IS, alive, 5539 days	2035.5
TCGA-YU-AA61-01A	29 years, male, white, stage:Stage IS, alive, 864 days	1978.9
TCGA-SN-A6IS-01A	26 years, male, white, stage:Stage IS, alive, 496 days	1849.0
TCGA-WZ-A7V3-01A	20 years, male, white, stage:Stage I, alive, 753 days	1848.3
TCGA-2X-A9D5-01A	49 years, male, white, stage:Stage I, alive, 435 days	1806.6
TCGA-2X-A9D6-01A	42 years, male, white, stage:Stage I, alive, 607 days	1790.3
TCGA-WZ-A7V5-01A	27 years, male, white, stage:Stage I, alive, 1061 days	1788.8
TCGA-4K-AA1I-01A	26 years, male, white, stage:Stage IA, alive, 3 days	1776.0
TCGA-2G-AAG9-01A	25 years, male, white, stage:Stage IIIB, alive, 2234 days	1767.3
TCGA-XE-A8H4-01A	23 years, male, white, stage:Stage IA, alive, 559 days	1766.2
TCGA-SN-A84W-01A	30 years, male, white, stage:Stage IS, alive, 293 days	1752.7
TCGA-2G-AAGP-01A	33 years, male, white, stage:Stage IIA, alive, 4018 days	1751.1
TCGA-2G-AAFJ-01A	23 years, male, asian, stage:'--, alive, 792 days	1707.3
TCGA-XE-AANJ-01A	39 years, male, white, stage:Stage IS, alive, 2007 days	1688.8
TCGA-2G-AAFV-01A	31 years, male, white, stage:Stage IS, alive, 1389 days	1670.4
TCGA-XE-A9SE-01A	35 years, male, white, stage:Stage IA, alive, 708 days	1661.6
TCGA-XE-AANI-01A	37 years, male, white, stage:Stage IS, alive, 1041 days	1598.1
TCGA-YU-A90P-01A	25 years, male, white, stage:Stage IA, alive, 2069 days	1592.9
TCGA-2G-AAHA-01A	48 years, male, white, stage:Stage IB, alive, 3349 days	1558.2
TCGA-2G-AAGC-01A	28 years, male, white, stage:Stage IS, alive, 2585 days	1530.8
TCGA-WZ-A8D5-01A	38 years, male, white, stage:'--, alive, 774 days	1516.7
TCGA-XE-AANV-01A	52 years, male, stage:Stage IB, alive, 1701 days	1462.2
TCGA-SB-A76C-01A	38 years, male, white, stage:'--, alive, 42 days	1460.1
TCGA-XE-AAOD-01A	39 years, male, white, stage:Stage IB, alive, 2058 days	1459.9
TCGA-2G-AAF4-01A	30 years, male, white, stage:Stage I, alive, 2315 days	1414.8
TCGA-YU-A94D-01A	28 years, male, stage:Stage IIIB, alive, 2167 days	1366.1
TCGA-VF-A8A9-01A	31 years, male, white, stage:Stage IA, alive, 1119 days	1361.4
TCGA-W4-A7U4-01A	23 years, male, white, stage:'--, alive, 738 days	1327.0
TCGA-W4-A7U3-01A	26 years, male, white, stage:'--, alive, 149 days	1325.1
TCGA-2G-AAGE-01A	21 years, male, white, stage:Stage IS, alive, 2478 days	1322.3
TCGA-XE-AAOJ-01A	24 years, male, white, stage:Stage IS, alive, 1550 days	1303.7
TCGA-S6-A8JW-01A	37 years, male, white, stage:Stage IS, alive, 698 days	1298.1
TCGA-2G-AAGS-01A	39 years, male, white, stage:Stage IIIB, alive, 4816 days	1284.2
TCGA-2G-AAGM-01A	51 years, male, white, stage:Stage IS, alive, 3891 days	1255.8
TCGA-SB-A6J6-01A	22 years, male, white, stage:Stage IA, alive, 413 days	1254.2
TCGA-2G-AAH0-01A	30 years, male, white, stage:Stage IS, alive, 5477 days	1236.3
TCGA-2G-AAKL-01A	26 years, male, white, stage:Stage II, alive, 7023 days	1182.1
TCGA-2G-AAF8-01A	33 years, male, white, stage:Stage IA, alive, 3911 days	1181.2
TCGA-YU-AA4L-01A	27 years, male, black or african american, stage:Stage IIIC, alive, 1573 days	1148.7
TCGA-2G-AAKD-01A	18 years, male, white, stage:Stage III, alive, 6340 days	1132.1
TCGA-2G-AAL7-01A	32 years, male, white, stage:Stage IS, alive, 3991 days	1131.4
TCGA-XY-A9T9-01A	37 years, male, white, stage:Stage IS, alive, 281 days	1126.2
TCGA-2G-AAG0-01A	23 years, male, white, stage:Stage IS, alive, 1529 days	1090.1
TCGA-4K-AA1H-01A	26 years, male, white, stage:Stage IA, alive, 518 days	1089.6
TCGA-SO-A8JP-01A	29 years, male, white, stage:Stage I, alive, 540 days	1083.2
TCGA-XE-A8H1-01A	24 years, male, white, stage:Stage IS, alive, 209 days	1064.6
TCGA-2G-AAG7-01A	33 years, male, white, stage:Stage IS, alive, 2475 days	1007.5
TCGA-2G-AAGI-01A	33 years, male, white, stage:Stage IS, alive, 3137 days	998.9
TCGA-XY-A8S2-01A	67 years, male, white, stage:Stage I, alive, 672 days	988.3
TCGA-4K-AAAL-01A	31 years, male, white, stage:Stage IS, alive, 483 days	976.6
TCGA-2G-AAGO-01A	41 years, male, white, stage:Stage IS, alive, 4026 days	953.8
TCGA-2G-AAGX-01A	22 years, male, white, stage:Stage IA, alive, 5514 days	940.3
TCGA-2G-AAFG-01A	30 years, male, white, stage:Stage IS, alive, 6183 days	936.7
TCGA-VF-A8AE-01A	39 years, male, white, stage:Stage IA, alive, 727 days	935.1
TCGA-2G-AAGA-01A	38 years, male, white, stage:Stage IIA, alive, 2439 days	930.8
TCGA-W4-A7U2-01A	26 years, male, white, stage:'--, alive, 1263 days	923.8
TCGA-2G-AAGT-01A	30 years, male, white, stage:Stage IS, alive, 4406 days	916.0
TCGA-XE-AAOB-01A	27 years, male, white, stage:Stage IS, dead, 513 days	911.0
TCGA-2G-AAH8-01A	45 years, male, white, stage:Stage IIIC, alive, 2248 days	906.7
TCGA-2G-AAHT-01A	32 years, male, white, stage:Stage IS, alive, 542 days	904.3
TCGA-XE-AAO3-01A	33 years, male, asian, stage:Stage I, alive, 2857 days	897.1
TCGA-2G-AAFY-01A	24 years, male, white, stage:Stage IIA, alive, 1099 days	891.2
TCGA-XE-A8H5-01A	29 years, male, stage:Stage IS, alive, 1217 days	864.6
TCGA-2G-AAFH-01A	38 years, male, white, stage:Stage IIB, alive, 1375 days	863.6
TCGA-2G-AAKG-01A	22 years, male, white, stage:Stage I, alive, 6598 days	862.9
TCGA-2G-AAKH-01A	19 years, male, white, stage:Stage II, alive, 6862 days	858.7
TCGA-2G-AAEX-01A	38 years, male, white, stage:Stage IS, alive, 1259 days	853.5
TCGA-VF-A8AA-01A	51 years, male, white, stage:Stage I, alive, 1146 days	836.1
TCGA-2G-AAEW-01A	31 years, male, white, stage:Stage IS, dead, 618 days	821.2
TCGA-2G-AAFI-01A	41 years, male, white, stage:Stage IB, alive, 675 days	792.0
TCGA-2G-AAGF-01A	28 years, male, white, stage:Stage IS, alive, 2734 days	775.6
TCGA-2G-AAGN-01A	41 years, male, white, stage:Stage IIIB, alive, 3656 days	759.7
TCGA-SN-A84Y-01A	18 years, male, white, stage:Stage IS, alive, 524 days	724.4
TCGA-2G-AAF1-01A	28 years, male, asian, stage:Stage IS, alive, 1403 days	716.9
TCGA-2G-AAL5-01A	31 years, male, white, stage:Stage I, alive, 7437 days	711.8
TCGA-2G-AAGZ-01A	27 years, male, white, stage:Stage IIIA, alive, 5233 days	696.9
TCGA-VF-A8AD-01A	36 years, male, white, stage:Stage IB, alive, 1006 days	676.4
TCGA-2G-AAH4-01A	34 years, male, white, stage:Stage II, alive, 6210 days	647.8
TCGA-2G-AAFZ-01A	32 years, male, white, stage:Stage III, alive, 1353 days	626.2
TCGA-2G-AAFL-01A	35 years, male, white, stage:Stage IB, alive, 750 days	615.5
TCGA-2G-AAHN-01A	32 years, male, white, stage:Stage I, alive, 6445 days	577.0
TCGA-X3-A8G4-01A	33 years, male, white, stage:Stage IS, alive, 856 days	559.5
TCGA-4K-AA1G-01A	34 years, male, white, stage:Stage IS, alive, 436 days	553.5
TCGA-2G-AAG8-01A	21 years, male, white, stage:Stage IB, alive, 2289 days	552.8
TCGA-2G-AAGK-01A	20 years, male, white, stage:Stage IS, alive, 3621 days	528.8
TCGA-2G-AALP-01A	43 years, male, white, stage:Stage IIIB, alive, 2645 days	528.3
TCGA-XE-AANR-01A	23 years, male, white, stage:Stage I, alive, 14 days	528.1
TCGA-2G-AAF6-01A	28 years, male, white, stage:Stage IS, alive, 3491 days	520.4
TCGA-2G-AAGW-01A	38 years, male, white, stage:Stage IS, alive, 4899 days	512.7
TCGA-VF-A8A8-01A	18 years, male, white, stage:Stage IA, alive, 1131 days	494.0
TCGA-VF-A8AC-01A	29 years, male, white, stage:Stage IA, alive, 1083 days	462.4
TCGA-2G-AAGJ-01A	28 years, male, black or african american, stage:Stage IA, alive, 2938 days	434.9
TCGA-2G-AAFO-01A	33 years, male, white, stage:Stage IIA, alive, 685 days	424.2
TCGA-2G-AAFN-01A	26 years, male, white, stage:Stage IIIB, alive, 773 days	378.6
TCGA-SN-A84X-01A	21 years, male, white, stage:Stage IS, alive, 312 days	365.0
TCGA-2G-AAFM-01A	31 years, male, white, stage:Stage IIA, alive, 503 days	362.2
TCGA-2G-AAHL-01A	26 years, male, white, stage:Stage I, alive, 7081 days	276.7
TCGA-2G-AAHP-01A	31 years, male, white, stage:Stage IS, alive, 5667 days	92.9
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TESTIS CANCER - Protein expressionⁱ

Pending cancer tissue analysis