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SCAMP5
HPA
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  • SUMMARY

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  • SCAMP5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SCAMP5
Synonyms MGC24969
Gene descriptioni

Full gene name according to HGNC.

Secretory carrier membrane protein 5
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 15
Cytoband q24.2
Chromosome location (bp) 74957219 - 75021495
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

11
Ensembl ENSG00000198794 (version 109)
Entrez gene 192683
HGNC HGNC:30386
UniProt Q8TAC9 (UniProt - Evidence at protein level)
neXtProt NX_Q8TAC9
GeneCards SCAMP5
Antibodypedia SCAMP5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Required for the calcium-dependent exocytosis of signal sequence-containing cytokines such as CCL5. Probably acts in cooperation with the SNARE machinery. May play a role in accumulation of expanded polyglutamine (polyQ) protein huntingtin (HTT) in case of endoplasmic reticulum stress by inhibiting the endocytosis pathway.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Exocytosis, Protein transport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

Involved in positive regulation of cytokine production; regulation of vesicle-mediated transport; and response to endoplasmic reticulum stress. Located in Golgi apparatus; plasma membrane; and recycling endosome membrane. Is integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SCAMP5-201
ENSP00000355387
ENST00000361900
Q8TAC9
[Direct mapping] Secretory carrier-associated membrane protein 5
Show all
A0A0A8K8F5
[Target identity:100%; Query identity:100%] Secretory carrier-associated membrane protein
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001819 [positive regulation of cytokine production]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006887 [exocytosis]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032588 [trans-Golgi network membrane]
GO:0034976 [response to endoplasmic reticulum stress]
GO:0044877 [protein-containing complex binding]
GO:0045202 [synapse]
GO:0045806 [negative regulation of endocytosis]
GO:0045956 [positive regulation of calcium ion-dependent exocytosis]
GO:0055038 [recycling endosome membrane]
GO:0110165 [cellular anatomical entity]
Show all
235 aa
26.1 kDa
No 4
SCAMP5-202
ENSP00000406547
ENST00000425597
Q8TAC9
[Direct mapping] Secretory carrier-associated membrane protein 5
Show all
A0A0A8K8F5
[Target identity:100%; Query identity:100%] Secretory carrier-associated membrane protein
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001819 [positive regulation of cytokine production]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006887 [exocytosis]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032588 [trans-Golgi network membrane]
GO:0034976 [response to endoplasmic reticulum stress]
GO:0044877 [protein-containing complex binding]
GO:0045202 [synapse]
GO:0045806 [negative regulation of endocytosis]
GO:0045956 [positive regulation of calcium ion-dependent exocytosis]
GO:0055038 [recycling endosome membrane]
GO:0110165 [cellular anatomical entity]
Show all
235 aa
26.1 kDa
No 4
SCAMP5-203
ENSP00000455313
ENST00000562212
Q8TAC9
[Direct mapping] Secretory carrier-associated membrane protein 5
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0001819 [positive regulation of cytokine production]
GO:0005515 [protein binding]
GO:0005768 [endosome]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006887 [exocytosis]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030672 [synaptic vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032588 [trans-Golgi network membrane]
GO:0034976 [response to endoplasmic reticulum stress]
GO:0044877 [protein-containing complex binding]
GO:0045202 [synapse]
GO:0045806 [negative regulation of endocytosis]
GO:0045956 [positive regulation of calcium ion-dependent exocytosis]
GO:0055038 [recycling endosome membrane]
GO:0110165 [cellular anatomical entity]
Show all
243 aa
26.9 kDa
No 4
SCAMP5-204
ENSP00000456505
ENST00000562327
H3BS22
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
116 aa
13.4 kDa
No 3
SCAMP5-208
ENSP00000455039
ENST00000564779
H3BNW6
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
148 aa
16.6 kDa
No 3
SCAMP5-210
ENSP00000457121
ENST00000565989
H3BTD1
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
69 aa
7.7 kDa
No 1
SCAMP5-211
ENSP00000454766
ENST00000566872
H3BNB3
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
95 aa
10.9 kDa
No 2
SCAMP5-214
ENSP00000454860
ENST00000567920
H3BNH7
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
123 aa
14.1 kDa
No 3
SCAMP5-215
ENSP00000456991
ENST00000568018
H3BT30
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
97 aa
11.1 kDa
No 2
SCAMP5-216
ENSP00000454602
ENST00000568081
H3BMY4
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
168 aa
18.1 kDa
No 2
SCAMP5-217
ENSP00000457444
ENST00000568119
H3BU33
[Direct mapping] Secretory carrier-associated membrane protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0110165 [cellular anatomical entity]
Show all
46 aa
5.5 kDa
No 0

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