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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-ND1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
7538.8
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
31370.0
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
31313.0
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
28695.7
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
24458.8
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
22563.1
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
22454.8
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
20838.3
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
20819.8
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
19894.4
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
19750.5
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
18157.6
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
17477.8
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
17081.1
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
15906.9
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
15854.9
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
15782.2
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
15662.3
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
15085.4
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
14842.9
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
14823.4
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
14775.9
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
14666.5
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
14536.8
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
14402.4
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
14014.3
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
13896.1
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
13831.5
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
13583.4
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
13578.2
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
13540.5
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
13455.8
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
13433.8
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
13033.6
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
12935.2
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
12900.0
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
12822.4
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
12726.0
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
12595.4
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
12584.4
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
12412.7
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
12337.6
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
12209.0
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
11909.3
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
11884.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
11842.4
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
11782.9
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
11769.2
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
11732.3
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
11691.3
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
11668.3
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
11555.7
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
11420.0
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
11392.4
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
11358.1
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
11311.2
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
11258.5
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
11220.6
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
11216.6
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
11183.2
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
11164.4
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
11119.0
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
11051.6
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
11042.0
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
11006.6
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
10979.7
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
10958.8
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
10950.0
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
10933.1
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
10786.0
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
10720.9
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
10581.9
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
10552.9
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
10466.3
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
10448.9
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
10411.3
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
10388.4
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
10305.8
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
10265.1
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
10261.2
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
10256.8
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
10221.0
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
10202.4
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
10187.2
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
10145.9
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
10111.9
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
10023.4
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
10017.3
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
10011.4
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
10009.6
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
9975.8
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
9952.7
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
9944.8
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
9901.3
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
9863.8
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
9676.7
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
9675.5
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
9621.6
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
9579.5
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
9539.0
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
9526.3
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
9512.5
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
9417.5
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
9364.0
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
9278.8
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
9238.7
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
9236.5
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
9223.2
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
9128.8
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
9122.4
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
9110.6
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
9076.3
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
9060.2
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
8986.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
8935.0
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
8928.8
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
8906.0
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
8903.8
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
8795.4
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
8688.7
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
8683.3
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
8677.3
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
8664.0
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
8564.3
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
8516.0
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
8502.4
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
8475.7
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
8444.7
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
8401.4
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
8389.3
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
8374.1
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
8358.1
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
8344.4
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
8198.8
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
8129.8
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
8126.4
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
8113.4
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
8111.6
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
8016.1
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
7988.7
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
7988.4
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
7946.4
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
7925.1
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
7878.2
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
7809.1
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
7791.1
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
7754.8
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
7707.5
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
7612.9
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
7575.6
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
7515.9
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
7505.1
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
7462.9
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
7406.8
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
7384.5
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
7373.2
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
7310.7
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
7304.5
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
7298.6
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
7294.0
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
7268.2
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
7247.3
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
7205.5
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
7186.8
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
7146.8
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
7041.6
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
7019.7
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
6941.7
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
6912.6
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
6902.5
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
6891.6
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
6821.3
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
6696.3
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
6696.3
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
6671.5
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
6633.8
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
6606.6
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
6606.5
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
6602.5
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
6537.2
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
6530.0
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
6510.1
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
6502.2
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
6453.8
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
6427.6
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
6419.5
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
6406.8
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
6353.9
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
6340.8
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
6316.0
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
6259.2
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
6230.6
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
6220.2
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
6195.6
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
6163.3
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
6132.3
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
6103.1
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
6050.0
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
6044.0
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
6009.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
5990.4
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
5974.4
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
5904.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
5902.5
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
5874.3
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
5859.5
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
5850.8
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
5848.1
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
5843.4
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
5779.7
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
5775.2
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
5773.0
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
5751.1
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
5701.9
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
5689.6
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
5612.7
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
5589.4
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
5548.2
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
5525.2
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
5490.6
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
5486.8
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
5485.2
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
5480.1
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
5479.7
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
5429.7
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
5421.2
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
5411.8
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
5388.7
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
5325.6
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
5209.8
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
5196.9
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
5180.5
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
5116.9
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
5116.4
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
5102.8
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
5070.9
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
5050.1
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
5037.2
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
5012.5
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
5005.5
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
5000.1
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
4995.9
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
4963.2
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
4957.4
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
4951.3
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
4950.7
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
4940.0
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
4936.2
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
4924.8
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
4905.8
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
4904.3
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
4852.0
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
4812.5
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
4807.3
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
4774.9
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
4771.3
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
4764.8
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
4683.1
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
4628.6
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
4601.9
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
4581.9
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
4561.5
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
4561.0
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
4559.8
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
4549.2
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
4514.3
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
4512.3
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
4504.8
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
4501.9
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
4493.3
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
4490.4
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
4476.1
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
4470.5
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
4406.7
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
4397.7
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
4381.2
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
4365.1
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
4342.3
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
4331.1
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
4300.6
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
4239.0
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
4216.3
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
4183.5
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
4170.9
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
4169.3
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
4148.4
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
4147.4
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
4131.3
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
4096.2
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
4066.1
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
3949.1
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
3944.4
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
3941.9
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
3898.2
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
3887.3
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3858.7
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
3842.1
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
3825.9
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
3729.1
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
3714.4
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
3690.1
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
3667.0
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
3648.5
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
3643.7
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
3590.0
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
3587.1
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
3569.3
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
3560.1
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
3542.0
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
3541.6
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
3533.1
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
3521.3
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
3519.6
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
3499.3
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
3473.8
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
3413.2
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
3408.8
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
3325.3
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
3307.8
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
3291.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
3188.8
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
3128.5
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
3116.8
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
3100.5
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
3018.8
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
3018.2
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
2992.9
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
2924.3
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
2885.0
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
2842.8
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
2795.5
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2789.7
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
2773.0
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
2767.2
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
2677.0
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
2658.9
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
2636.0
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
2606.6
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
2524.1
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
2505.2
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
2486.8
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
2480.6
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
2467.0
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
2415.0
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2337.8
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
2323.7
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
2270.5
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
2208.1
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
2105.9
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
1974.6
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
1945.3
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
1842.8
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
1823.3
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
1749.3
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
1669.2
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
1653.8
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
1637.2
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
1525.5
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
1517.8
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
1446.7
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
1373.5
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
1191.0
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.