MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92627.9 nTPM
HPA Brain:58128.8 nTPM
GTEx:92627.9 nTPM
Pig:37390.6 nTPM
Mouse:23930.4 nTPM
Allen mouse:24.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58128.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45099.2
2586 Male, age 75, left hemisphere 75541.5
2219 Male, age 76, both hemispheres 69665.9
2666 Male, age 74, left hemisphere 55817.7
2828 Female, age 72, unknown 52642.9
1833 Male, age 53, unknown 42354.6
1830 Male, age 51, unknown 38821.8
1870 Female, age 42, unknown 37822.7
1827 Male, age 72, unknown 30037.7
2019 Male, age 18, unknown 27627.7
2411 Female, age 72, unknown 20659.4
Dorsal raphe nucleus
nTPM: 25289.9
1828 Male, age 53, unknown 40281.7
2047 Male, age 72, unknown 28729.9
2750 Male, age 76, both hemispheres 24883.9
2016 Female, age 72, unknown 22011.9
2298 Female, age 72, unknown 10542.2
Inferior colliculus
nTPM: 36966.2
2849 Male, age 72, unknown 67500.4
1890 Male, age 53, unknown 35029.5
1848 Female, age 42, unknown 30950.8
2097 Female, age 72, unknown 14384.0
Median raphe nucleus
nTPM: 58128.8
2220 Male, age 76, midline 58128.8
Periaquaductal grey, anterior
nTPM: 24538.6
2502 Female, age 75, unknown 29817.3
1795 Male, age 51, unknown 22666.0
1947 Male, age 18, unknown 21132.6
Periaquaductal grey, dorsal
nTPM: 37059.4
2850 Male, age 76, both hemispheres 63541.6
1831 Male, age 72, unknown 31993.0
2464 Female, age 72, unknown 29343.6
1840 Male, age 53, unknown 23359.4
Periaquaductal grey, lateral
nTPM: 21230.4
2140 Male, age 76, both hemispheres 27647.7
2053 Male, age 18, unknown 22621.9
2272 Male, age 74, both hemispheres 13421.4
Pretectal area
nTPM: 35674.9
1817 Female, age 42, unknown 51655.1
1816 Male, age 51, unknown 50167.8
2667 Female, age 75, unknown 50102.3
1944 Female, age 72, unknown 49269.5
1815 Male, age 53, unknown 43769.2
2007 Male, age 72, unknown 42711.1
2825 Male, age 18, unknown 35960.8
2407 Male, age 75, both hemispheres 26195.3
2224 Female, age 72, unknown 17349.2
2316 Male, age 76, right hemisphere 13784.7
2273 Male, age 74, both hemispheres 11459.2
Red nucleus
nTPM: 39803.1
2588 Male, age 74, left hemisphere 52890.1
2584 Male, age 75, left hemisphere 50013.4
2503 Female, age 72, unknown 50002.2
2823 Male, age 76, right hemisphere 45174.6
1954 Female, age 42, unknown 42533.9
1865 Male, age 51, unknown 39454.5
2785 Male, age 18, unknown 37385.5
2227 Male, age 72, unknown 35299.5
2769 Male, age 72, unknown 34133.5
1904 Male, age 53, unknown 32130.1
1821 Female, age 72, unknown 29853.1
2725 Female, age 75, unknown 28767.2
Substantia nigra
nTPM: 41265.1
2665 Male, age 74, both hemispheres 76142.3
2699 Male, age 18, unknown 72888.1
1916 Female, age 42, unknown 54623.0
1941 Male, age 53, unknown 41305.8
1889 Female, age 72, unknown 35554.0
2583 Male, age 75, right hemisphere 34637.6
1851 Male, age 51, unknown 27518.1
2590 Female, age 75, unknown 25330.4
2241 Male, age 72, unknown 22989.5
2409 Female, age 72, unknown 21661.7
Superior colliculus
nTPM: 33179.2
2664 Male, age 75, both hemispheres 60770.0
2587 Male, age 74, left hemisphere 38419.5
2087 Female, age 72, unknown 34920.6
2668 Female, age 75, unknown 32797.1
1913 Female, age 42, unknown 31238.7
1839 Male, age 51, unknown 30571.3
1895 Male, age 76, right hemisphere 28011.8
1995 Male, age 72, unknown 27796.7
1796 Male, age 53, unknown 23802.9
2261 Male, age 18, unknown 23463.7
Ventral tegmental area
nTPM: 35347.6
2218 Male, age 76, both hemispheres 55651.3
2223 Female, age 72, unknown 41175.5
1942 Male, age 51, unknown 34614.9
1915 Female, age 42, unknown 28710.6
2021 Male, age 53, unknown 27618.5
2410 Female, age 72, unknown 24315.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92627.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92627.9
Samples: 139

Max nTPM: 307051.4
Min nTPM: 15490.6
Std nTPM: 58281.7
Median nTPM: 72731.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 307051.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 287907.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 257788.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 244479.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 236420.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 215847.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 214650.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 209568.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 206472.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 199125.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 195473.5
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37390.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31636.7
Samples: 4

Max nTPM: 41896.5
Min nTPM: 20302.0
Sample A Female 41896.5
Sample B Female 28179.7
Sample C Male 36168.5
Sample D Male 20302.0
Midbrain
nTPM: 37390.6
Samples: 4

Max nTPM: 50391.1
Min nTPM: 28159.5
Sample A Female 28159.5
Sample B Female 50391.1
Sample C Male 40572.3
Sample D Male 30439.5
Periaqueductal gray
nTPM: 28063.9
Samples: 3

Max nTPM: 31065.9
Min nTPM: 24250.1
Sample B Female 28875.6
Sample C Male 31065.9
Sample D Male 24250.1
Superior colliculi
nTPM: 31302.2
Samples: 4

Max nTPM: 40300.3
Min nTPM: 11385.0
Sample A Female 39094.6
Sample B Female 11385.0
Sample C Male 40300.3
Sample D Male 34428.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23930.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 23930.4
Samples: 4

Max nTPM: 25070.0
Min nTPM: 23007.5
Sample A Male 25070.0
Sample B Male 23938.1
Sample C Female 23705.9
Sample D Female 23007.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 24.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 24.3
74357755 Antisense, RP_051219_04_A04, Mouse strain C57BL/6J (56 days, male) 24.3

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