MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:100.7 nTPM
GTEx:13.8 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:51.7 nTPM
Mouse:47.8 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 100.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.1
2219 Male, age 76, both hemispheres 98.6
2666 Male, age 74, left hemisphere 75.6
1827 Male, age 72, unknown 66.5
2411 Female, age 72, unknown 63.4
2586 Male, age 75, left hemisphere 63.2
2828 Female, age 72, unknown 50.1
1870 Female, age 42, unknown 47.0
1833 Male, age 53, unknown 42.6
1830 Male, age 51, unknown 40.3
2019 Male, age 18, unknown 24.2
Dorsal raphe nucleus
nTPM: 63.0
2298 Female, age 72, unknown 85.6
2047 Male, age 72, unknown 80.3
2750 Male, age 76, both hemispheres 60.4
1828 Male, age 53, unknown 48.8
2016 Female, age 72, unknown 39.7
Inferior colliculus
nTPM: 54.7
2097 Female, age 72, unknown 68.0
2849 Male, age 72, unknown 57.1
1848 Female, age 42, unknown 47.5
1890 Male, age 53, unknown 46.1
Median raphe nucleus
nTPM: 100.7
2220 Male, age 76, midline 100.7
Periaquaductal grey, anterior
nTPM: 79.2
2502 Female, age 75, unknown 99.3
1795 Male, age 51, unknown 79.2
1947 Male, age 18, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 55.8
1840 Male, age 53, unknown 65.9
2464 Female, age 72, unknown 55.9
2850 Male, age 76, both hemispheres 55.1
1831 Male, age 72, unknown 46.2
Periaquaductal grey, lateral
nTPM: 46.5
2053 Male, age 18, unknown 55.9
2140 Male, age 76, both hemispheres 54.7
2272 Male, age 74, both hemispheres 29.1
Pretectal area
nTPM: 55.0
2224 Female, age 72, unknown 82.9
1816 Male, age 51, unknown 72.6
1944 Female, age 72, unknown 68.7
2825 Male, age 18, unknown 65.2
2007 Male, age 72, unknown 55.4
2667 Female, age 75, unknown 54.2
2316 Male, age 76, right hemisphere 50.8
1815 Male, age 53, unknown 48.9
1817 Female, age 42, unknown 46.1
2407 Male, age 75, both hemispheres 37.7
2273 Male, age 74, both hemispheres 22.9
Red nucleus
nTPM: 20.7
2584 Male, age 75, left hemisphere 56.5
2785 Male, age 18, unknown 33.4
1954 Female, age 42, unknown 23.2
1821 Female, age 72, unknown 22.6
2769 Male, age 72, unknown 19.8
2227 Male, age 72, unknown 19.1
2503 Female, age 72, unknown 17.1
1865 Male, age 51, unknown 13.7
1904 Male, age 53, unknown 13.5
2588 Male, age 74, left hemisphere 11.8
2725 Female, age 75, unknown 9.3
2823 Male, age 76, right hemisphere 8.7
Substantia nigra
nTPM: 59.2
1941 Male, age 53, unknown 93.6
1916 Female, age 42, unknown 84.7
2665 Male, age 74, both hemispheres 82.3
1851 Male, age 51, unknown 67.7
2241 Male, age 72, unknown 60.0
2699 Male, age 18, unknown 50.1
1889 Female, age 72, unknown 49.7
2409 Female, age 72, unknown 42.9
2583 Male, age 75, right hemisphere 37.9
2590 Female, age 75, unknown 23.2
Superior colliculus
nTPM: 65.3
2668 Female, age 75, unknown 186.6
1796 Male, age 53, unknown 69.1
2664 Male, age 75, both hemispheres 65.4
2261 Male, age 18, unknown 63.6
1895 Male, age 76, right hemisphere 60.3
1839 Male, age 51, unknown 54.6
2087 Female, age 72, unknown 48.3
2587 Male, age 74, left hemisphere 44.4
1913 Female, age 42, unknown 31.8
1995 Male, age 72, unknown 29.2
Ventral tegmental area
nTPM: 64.7
2218 Male, age 76, both hemispheres 79.1
1915 Female, age 42, unknown 70.0
2021 Male, age 53, unknown 67.2
1942 Male, age 51, unknown 66.2
2410 Female, age 72, unknown 55.9
2223 Female, age 72, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 139

Max nTPM: 89.9
Min nTPM: 0.0
Std nTPM: 14.4
Median nTPM: 8.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 45.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 42.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 42.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 39.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 36.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 35.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 34.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.7
Samples: 4

Max nTPM: 75.5
Min nTPM: 8.2
Sample A Female 64.0
Sample B Female 35.2
Sample C Male 75.5
Sample D Male 8.2
Midbrain
nTPM: 51.7
Samples: 4

Max nTPM: 113.3
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 28.4
Sample C Male 113.3
Sample D Male 54.9
Periaqueductal gray
nTPM: 33.6
Samples: 3

Max nTPM: 50.8
Min nTPM: 24.3
Sample B Female 24.3
Sample C Male 50.8
Sample D Male 25.8
Superior colliculi
nTPM: 47.0
Samples: 4

Max nTPM: 75.5
Min nTPM: 23.9
Sample A Female 39.1
Sample B Female 23.9
Sample C Male 75.5
Sample D Male 49.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.8
Samples: 4

Max nTPM: 51.3
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 50.5
Sample C Female 51.3
Sample D Female 50.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
79591595 Antisense, RP_071204_04_D07, Mouse strain C57BL/6J (56 days, male) 4.9
80342072 Antisense, RP_071204_04_D07, Mouse strain C57BL/6J (56 days, male) 3.4
620 Antisense, RP_Baylor_102880, Mouse strain C57BL/6J (56 days, male) 1.1
621 Antisense, RP_Baylor_102880, Mouse strain C57BL/6J (56 days, male) 0.9
622 Sense, RPS_Baylor_37010, Mouse strain C57BL/6J (56 days, male) 0.0

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