MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:64.4 nTPM
GTEx:17.3 nTPM
FANTOM5:60.9 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:44.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.1
2586 Male, age 75, left hemisphere 77.0
2019 Male, age 18, unknown 71.8
1827 Male, age 72, unknown 63.6
2828 Female, age 72, unknown 62.6
2411 Female, age 72, unknown 61.2
2666 Male, age 74, left hemisphere 60.8
1870 Female, age 42, unknown 58.3
2219 Male, age 76, both hemispheres 57.3
1833 Male, age 53, unknown 55.4
1830 Male, age 51, unknown 52.8
Dorsal raphe nucleus
nTPM: 55.0
2750 Male, age 76, both hemispheres 62.2
2298 Female, age 72, unknown 59.5
2047 Male, age 72, unknown 54.3
1828 Male, age 53, unknown 49.7
2016 Female, age 72, unknown 49.1
Inferior colliculus
nTPM: 54.8
2097 Female, age 72, unknown 62.5
1848 Female, age 42, unknown 54.7
1890 Male, age 53, unknown 53.4
2849 Male, age 72, unknown 48.6
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Periaquaductal grey, anterior
nTPM: 64.4
2502 Female, age 75, unknown 68.0
1795 Male, age 51, unknown 64.2
1947 Male, age 18, unknown 61.0
Periaquaductal grey, dorsal
nTPM: 46.6
2464 Female, age 72, unknown 50.7
1840 Male, age 53, unknown 47.7
1831 Male, age 72, unknown 47.0
2850 Male, age 76, both hemispheres 41.0
Periaquaductal grey, lateral
nTPM: 49.9
2053 Male, age 18, unknown 54.7
2272 Male, age 74, both hemispheres 47.8
2140 Male, age 76, both hemispheres 47.2
Pretectal area
nTPM: 64.2
2007 Male, age 72, unknown 77.1
1816 Male, age 51, unknown 76.7
1817 Female, age 42, unknown 73.0
2667 Female, age 75, unknown 68.7
1815 Male, age 53, unknown 66.5
1944 Female, age 72, unknown 64.4
2407 Male, age 75, both hemispheres 62.6
2825 Male, age 18, unknown 56.1
2316 Male, age 76, right hemisphere 55.4
2224 Female, age 72, unknown 53.9
2273 Male, age 74, both hemispheres 51.7
Red nucleus
nTPM: 57.8
2584 Male, age 75, left hemisphere 66.9
2785 Male, age 18, unknown 66.1
1821 Female, age 72, unknown 59.2
1904 Male, age 53, unknown 59.2
2588 Male, age 74, left hemisphere 58.6
2227 Male, age 72, unknown 57.9
1865 Male, age 51, unknown 57.1
2769 Male, age 72, unknown 56.0
2823 Male, age 76, right hemisphere 55.9
2503 Female, age 72, unknown 55.0
1954 Female, age 42, unknown 51.9
2725 Female, age 75, unknown 50.4
Substantia nigra
nTPM: 53.1
1889 Female, age 72, unknown 63.1
2583 Male, age 75, right hemisphere 61.0
1916 Female, age 42, unknown 58.4
1941 Male, age 53, unknown 57.4
1851 Male, age 51, unknown 57.0
2665 Male, age 74, both hemispheres 52.3
2241 Male, age 72, unknown 50.2
2590 Female, age 75, unknown 49.9
2409 Female, age 72, unknown 42.1
2699 Male, age 18, unknown 39.5
Superior colliculus
nTPM: 61.3
2664 Male, age 75, both hemispheres 67.1
2261 Male, age 18, unknown 66.3
2668 Female, age 75, unknown 64.5
1796 Male, age 53, unknown 62.7
2087 Female, age 72, unknown 62.1
1913 Female, age 42, unknown 61.2
1995 Male, age 72, unknown 58.8
1895 Male, age 76, right hemisphere 58.6
1839 Male, age 51, unknown 57.9
2587 Male, age 74, left hemisphere 53.8
Ventral tegmental area
nTPM: 55.4
2410 Female, age 72, unknown 60.4
2223 Female, age 72, unknown 58.9
2021 Male, age 53, unknown 56.3
2218 Male, age 76, both hemispheres 54.4
1942 Male, age 51, unknown 52.9
1915 Female, age 42, unknown 49.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 35.6
Min nTPM: 6.9
Std nTPM: 5.1
Median nTPM: 17.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 31.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 25.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 25.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 24.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.9
FF:10158-103A5 76 years, female 60.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 35.3
Min nTPM: 26.0
Sample A Female 35.2
Sample B Female 26.0
Sample C Male 35.3
Sample D Male 34.7
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 51.5
Min nTPM: 26.9
Sample A Female 39.5
Sample B Female 26.9
Sample C Male 51.5
Sample D Male 40.7
Periaqueductal gray
nTPM: 27.3
Samples: 3

Max nTPM: 30.6
Min nTPM: 24.2
Sample B Female 24.2
Sample C Male 30.6
Sample D Male 27.0
Superior colliculi
nTPM: 38.7
Samples: 4

Max nTPM: 44.5
Min nTPM: 28.2
Sample A Female 39.9
Sample B Female 28.2
Sample C Male 44.5
Sample D Male 42.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 44.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 48.5
Min nTPM: 40.8
Sample A Male 40.8
Sample B Male 41.8
Sample C Female 48.5
Sample D Female 47.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71495837 Antisense, RP_050913_03_F09, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org