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MT-CO3
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  • MT-CO3
CANCER LIVER CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
LIHC TCGA LIHC VALIDATION PROTEIN LIHC CPTAC PROTEIN EXPRESSION
ANTIBODIES
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VALIDATION
Dictionary
Liver cancer
Human cancer
Liver hepatocellular carcinoma
LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

MT-CO3 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 12612
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 18453.3
Number of samples 362
Samples
Sample Description pTPM
TCGA-MR-A8JO-01A 34 years, male, white, stage:Stage I, alive, 330 days 71890.0
TCGA-DD-A4NG-01A 77 years, male, white, stage:Stage IIIA, dead, 802 days 70712.5
TCGA-WX-AA47-01A 33 years, female, white, stage:Stage IIIA, dead, 556 days 66630.5
TCGA-DD-A3A6-01A 72 years, female, white, stage:Stage II, dead, 3258 days 58968.7
TCGA-DD-AAD6-01A 66 years, male, asian, stage:Stage IIIA, alive, 672 days 48199.4
TCGA-NI-A4U2-01A 71 years, male, white, stage:Stage IIIA, dead, 1791 days 47921.0
TCGA-BC-A10Q-01A 72 years, female, white, stage:'--, dead, 1135 days 44404.3
TCGA-CC-A8HV-01A 51 years, female, asian, stage:Stage II, dead, 279 days 44175.0
TCGA-DD-AACE-01A 62 years, male, asian, stage:Stage I, alive, 2184 days 42563.3
TCGA-EP-A26S-01A 70 years, male, white, stage:Stage I, alive, 608 days 40422.9
TCGA-DD-A3A2-01A 76 years, female, white, stage:Stage I, dead, 2131 days 39995.2
TCGA-DD-A4NB-01A 25 years, male, white, stage:Stage I, alive, 989 days 39792.7
TCGA-DD-AAEB-01A 60 years, male, asian, stage:Stage I, alive, 478 days 39544.3
TCGA-CC-A3MA-01A 61 years, male, asian, stage:Stage IIIA, dead, 303 days 38615.5
TCGA-ED-A7PX-01A 48 years, female, asian, stage:Stage II, alive, 6 days 38310.2
TCGA-DD-AADR-01A 58 years, male, asian, stage:Stage I, alive, 2028 days 38005.7
TCGA-WJ-A86L-01A 68 years, female, white, stage:Stage I, alive, 345 days 37943.9
TCGA-2Y-A9H2-01A 64 years, female, white, stage:Stage I, alive, 1731 days 36702.0
TCGA-5R-AA1D-01A 17 years, female, white, stage:Stage IIIA, alive, 449 days 36558.2
TCGA-RC-A7SH-01A 42 years, male, asian, stage:Stage II, alive, 468 days 36193.0
TCGA-EP-A3JL-01A 76 years, male, white, stage:Stage I, alive, 303 days 35931.3
TCGA-DD-AACX-01A 66 years, male, asian, stage:Stage II, alive, 170 days 34782.4
TCGA-DD-A4NA-01A 67 years, female, white, stage:Stage IIIC, alive, 1008 days 34613.5
TCGA-G3-A7M8-01A 31 years, male, asian, stage:Stage I, alive, 430 days 33177.3
TCGA-ED-A82E-01A 60 years, female, asian, stage:Stage IIIA, alive, 408 days 32587.4
TCGA-2Y-A9H8-01A 85 years, female, white, stage:'--, dead, 633 days 32163.6
TCGA-ED-A7PY-01A 20 years, female, asian, stage:Stage II, alive, 390 days 31941.1
TCGA-NI-A8LF-01A 74 years, male, white, stage:Stage I, alive, 799 days 31762.1
TCGA-DD-A1EB-01A 72 years, female, stage:Stage I, alive, 2017 days 31451.7
TCGA-RC-A7SF-01A 66 years, male, asian, stage:Stage I, alive, 579 days 31185.5
TCGA-DD-AAEA-01A 65 years, male, asian, stage:Stage I, alive, 575 days 30660.0
TCGA-DD-A73A-01A 71 years, male, white, stage:Stage I, alive, 728 days 30471.0
TCGA-WQ-A9G7-01A 71 years, female, white, stage:'--, alive, 30 days 30397.1
TCGA-MR-A520-01A 58 years, male, white, stage:Stage I, alive, 229 days 30240.9
TCGA-G3-A3CH-01A 53 years, male, asian, stage:Stage IIIA, alive, 780 days 29932.9
TCGA-HP-A5MZ-01A 78 years, male, stage:Stage I, dead, 91 days 29726.7
TCGA-CC-A5UD-01A 45 years, male, asian, stage:Stage IIIA, dead, 304 days 29679.8
TCGA-BC-A10T-01A 76 years, male, white, stage:'--, dead, 837 days 29576.2
TCGA-XR-A8TD-01A 49 years, female, white, stage:Stage IIIB, alive, 1030 days 29555.9
TCGA-DD-A4NI-01A 67 years, male, white, stage:Stage II, alive, 816 days 29376.9
TCGA-DD-AAW3-01A 69 years, male, asian, stage:Stage I, alive, 1633 days 28779.4
TCGA-ZP-A9D4-01A 64 years, female, white, stage:'--, alive, 395 days 28458.8
TCGA-WX-AA46-01A 61 years, male, white, stage:Stage II, alive, 756 days 28342.1
TCGA-KR-A7K2-01A 64 years, male, white, stage:Stage I, alive, 829 days 28336.9
TCGA-2Y-A9GW-01A 64 years, male, white, stage:Stage I, dead, 1271 days 28224.5
TCGA-CC-A7IH-01A 58 years, male, asian, stage:Stage IIIA, alive, 365 days 28223.9
TCGA-DD-A4ND-01A 56 years, female, white, stage:Stage I, alive, 2746 days 28216.6
TCGA-G3-AAV1-01A 51 years, male, asian, stage:Stage IIIC, dead, 359 days 28206.0
TCGA-BC-A3KF-01A 66 years, female, white, stage:Stage I, alive, 8 days 28196.3
TCGA-DD-AADL-01A 58 years, male, asian, stage:Stage I, alive, 636 days 28101.5
TCGA-RC-A7SB-01A 53 years, male, asian, stage:Stage II, alive, 588 days 27836.0
TCGA-FV-A3R3-01A 38 years, female, white, stage:Stage I, dead, 366 days 27519.2
TCGA-BD-A3ER-01A 62 years, male, white, stage:Stage II, alive, 1115 days 27376.8
TCGA-DD-A4NJ-01A 54 years, female, white, stage:Stage II, alive, 928 days 27342.5
TCGA-BC-A112-01A 80 years, male, white, stage:'--, dead, 153 days 27276.2
TCGA-CC-A7IL-01A 61 years, male, asian, stage:Stage IIIA, dead, 278 days 27073.6
TCGA-DD-A1EK-01A 64 years, female, white, stage:Stage IVB, dead, 558 days 27031.4
TCGA-2Y-A9H3-01A 45 years, male, white, stage:Stage II, alive, 1516 days 26871.0
TCGA-CC-A7IF-01A 59 years, male, asian, stage:Stage IIIA, dead, 649 days 26825.0
TCGA-DD-AACT-01A 69 years, female, asian, stage:Stage I, alive, 1562 days 26727.7
TCGA-G3-AAV4-01A 83 years, female, white, stage:Stage I, dead, 27 days 26662.8
TCGA-DD-A4NK-01A 80 years, female, white, stage:Stage IIIA, dead, 1210 days 26405.6
TCGA-BC-A10R-01A 66 years, female, white, stage:'--, dead, 308 days 26063.9
TCGA-DD-A39W-01A 29 years, female, white, stage:Stage III, dead, 827 days 26006.9
TCGA-RC-A6M5-01A 20 years, female, white, stage:Stage IVA, alive, 15 days 25717.8
TCGA-DD-AAED-01A 51 years, male, asian, stage:Stage I, alive, 763 days 25695.8
TCGA-DD-AACQ-01A 50 years, male, asian, stage:Stage II, dead, 432 days 25678.3
TCGA-WQ-AB4B-01A 62 years, male, white, stage:Stage II, alive, 395 days 25666.4
TCGA-RC-A6M4-01A 74 years, female, white, stage:Stage IIIA, alive, 22 days 25576.7
TCGA-BD-A2L6-01A 69 years, male, white, stage:'--, alive, 1363 days 25177.5
TCGA-DD-A1EL-01A 23 years, male, black or african american, stage:Stage II, dead, 415 days 24911.8
TCGA-CC-A9FS-01A 55 years, male, asian, stage:Stage II, alive, 211 days 24747.1
TCGA-ZS-A9CG-01A 55 years, male, white, stage:Stage II, alive, 341 days 24726.3
TCGA-2Y-A9GU-01A 55 years, female, white, stage:Stage I, alive, 1939 days 24707.3
TCGA-CC-A5UC-01A 63 years, male, asian, stage:Stage IIIA, dead, 347 days 24701.2
TCGA-KR-A7K0-01A 65 years, male, white, stage:Stage I, dead, 65 days 24318.8
TCGA-2Y-A9H6-01A 68 years, female, white, stage:Stage I, alive, 357 days 24317.9
TCGA-K7-AAU7-01A 61 years, male, white, stage:Stage II, alive, 359 days 24098.9
TCGA-BC-A110-01A 51 years, female, black or african american, stage:'--, dead, 2116 days 24031.1
TCGA-DD-AAE9-01A 69 years, male, asian, stage:Stage I, alive, 722 days 24021.8
TCGA-DD-A11B-01A 73 years, male, white, stage:Stage I, dead, 14 days 23768.9
TCGA-UB-AA0U-01A 60 years, male, white, stage:Stage II, alive, 327 days 23601.3
TCGA-DD-AAE6-01A 59 years, female, asian, stage:Stage I, alive, 141 days 23258.1
TCGA-DD-AADF-01A 64 years, female, asian, stage:Stage I, dead, 115 days 23223.3
TCGA-DD-A4NE-01A 75 years, female, white, stage:Stage IIIA, dead, 660 days 23151.1
TCGA-KR-A7K8-01A 57 years, male, stage:Stage I, alive, 906 days 23104.4
TCGA-ED-A4XI-01A 58 years, male, asian, stage:Stage II, alive, 819 days 23027.8
TCGA-CC-A8HT-01A 74 years, male, asian, stage:Stage IIIA, dead, 140 days 22976.4
TCGA-DD-A1EA-01A 68 years, male, asian, stage:Stage II, alive, 2415 days 22920.4
TCGA-DD-A4NS-01A 61 years, female, white, stage:Stage I, dead, 2456 days 22899.5
TCGA-G3-A3CI-01A 71 years, male, white, stage:Stage I, alive, 180 days 22821.5
TCGA-DD-AADU-01A 60 years, male, asian, stage:Stage II, alive, 554 days 22815.1
TCGA-DD-AACA-01A 65 years, male, asian, stage:Stage I, alive, 2301 days 22815.0
TCGA-DD-A118-01A 77 years, female, white, stage:Stage II, alive, 3437 days 22801.3
TCGA-DD-A4NF-01A 72 years, male, white, stage:Stage I, alive, 942 days 22672.1
TCGA-G3-A7M7-01A 65 years, male, white, stage:Stage I, alive, 361 days 22524.8
TCGA-DD-A3A4-01A 37 years, male, white, stage:Stage IIIA, dead, 612 days 22460.2
TCGA-2Y-A9H0-01A 49 years, male, white, stage:Stage IIIA, alive, 3675 days 22230.8
TCGA-UB-AA0V-01A 69 years, female, white, stage:Stage I, alive, 314 days 22091.5
TCGA-DD-AAW2-01A 69 years, male, asian, stage:Stage I, alive, 1855 days 22022.0
TCGA-DD-A73D-01A 68 years, female, white, stage:Stage II, alive, 693 days 21892.8
TCGA-PD-A5DF-01A 58 years, female, white, stage:Stage IIIB, dead, 639 days 21841.7
TCGA-G3-A25T-01A 45 years, female, white, stage:Stage IIIA, alive, 1553 days 21717.7
TCGA-ED-A66X-01A 35 years, male, asian, stage:Stage IIIA, alive, 406 days 21674.9
TCGA-G3-A5SM-01A 58 years, male, white, stage:Stage II, alive, 520 days 21646.6
TCGA-BC-A216-01A 62 years, female, white, stage:Stage IIIA, alive, 1351 days 21498.8
TCGA-ZS-A9CD-01A 73 years, male, white, stage:Stage II, dead, 1386 days 21491.1
TCGA-BC-A10X-01A 52 years, female, white, stage:Stage IIIA, dead, 770 days 21422.9
TCGA-G3-A5SL-01A 70 years, male, white, stage:Stage II, alive, 621 days 21411.5
TCGA-DD-A4NP-01A 32 years, male, white, stage:Stage I, alive, 3308 days 21145.3
TCGA-ED-A7PZ-01A 61 years, male, asian, stage:Stage II, alive, 6 days 21113.9
TCGA-BC-A10Z-01A 62 years, female, white, stage:Stage I, dead, 34 days 20996.5
TCGA-FV-A23B-01A 70 years, female, white, stage:Stage II, dead, 1852 days 20964.6
TCGA-DD-AAD8-01A 73 years, female, asian, stage:Stage I, alive, 1219 days 20940.3
TCGA-WX-AA44-01A 64 years, female, white, stage:Stage I, alive, 615 days 20882.6
TCGA-DD-AADW-01A 48 years, male, asian, stage:Stage I, alive, 587 days 20877.8
TCGA-G3-A5SK-01A 58 years, male, white, stage:Stage I, alive, 744 days 20849.3
TCGA-G3-A6UC-01A 65 years, male, white, stage:Stage IIIB, alive, 671 days 20831.4
TCGA-EP-A2KC-01A 62 years, male, black or african american, stage:Stage I, dead, 19 days 20779.7
TCGA-ZS-A9CF-01A 64 years, male, white, stage:Stage II, alive, 2412 days 20763.2
TCGA-DD-A4NQ-01A 60 years, male, white, stage:Stage II, dead, 373 days 20629.3
TCGA-G3-A25U-01A 63 years, female, asian, stage:Stage I, alive, 1636 days 20588.7
TCGA-XR-A8TC-01A 43 years, female, white, stage:Stage I, alive, 1339 days 20284.4
TCGA-DD-AAD2-01A 66 years, male, asian, stage:Stage I, alive, 658 days 20215.8
TCGA-DD-AADD-01A 51 years, male, asian, stage:Stage I, alive, 1231 days 20207.1
TCGA-2Y-A9GX-01A 68 years, male, white, stage:Stage I, alive, 2442 days 20206.5
TCGA-MI-A75C-01A 64 years, male, white, stage:Stage I, alive, 291 days 20137.2
TCGA-DD-A1EC-01A 20 years, female, white, stage:Stage I, alive, 602 days 20004.3
TCGA-DD-AAE3-01A 50 years, male, asian, stage:Stage I, alive, 566 days 19987.8
TCGA-DD-A4NL-01A 46 years, male, white, stage:Stage I, alive, 1711 days 19931.8
TCGA-5R-AAAM-01A 65 years, female, white, stage:Stage II, dead, 46 days 19835.3
TCGA-5C-A9VG-01A 58 years, male, white, stage:Stage II, alive, 328 days 19803.0
TCGA-DD-AADG-01A 70 years, male, asian, stage:Stage IIIA, alive, 1145 days 19776.6
TCGA-BC-A3KG-01A 68 years, female, white, stage:Stage II, alive, 680 days 19773.6
TCGA-DD-AACW-01A 43 years, male, asian, stage:Stage I, alive, 1424 days 19679.1
TCGA-G3-A5SJ-01A 59 years, male, white, stage:Stage I, alive, 698 days 19645.1
TCGA-CC-A7IE-01A 57 years, male, asian, stage:Stage IIIA, dead, 217 days 19614.8
TCGA-G3-A3CJ-01A 52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days 19454.5
TCGA-CC-5260-01A 61 years, female, asian, stage:Stage IIIC, dead, 87 days 19378.2
TCGA-XR-A8TF-01A 74 years, male, white, stage:Stage I, dead, 693 days 19377.4
TCGA-DD-AACZ-01A 63 years, female, asian, stage:Stage I, dead, 171 days 19059.4
TCGA-DD-AACF-01A 68 years, male, asian, stage:Stage I, dead, 365 days 19029.4
TCGA-DD-A4NH-01A 65 years, female, white, stage:Stage IIIB, alive, 917 days 18985.9
TCGA-ZP-A9D0-01A 67 years, female, black or african american, stage:'--, alive, 1091 days 18948.1
TCGA-CC-A7IK-01A 59 years, male, asian, stage:Stage IIIA, dead, 262 days 18938.3
TCGA-DD-AACD-01A 48 years, male, asian, stage:Stage I, dead, 381 days 18885.3
TCGA-2Y-A9H4-01A 68 years, male, black or african american, stage:Stage I, alive, 1452 days 18723.1
TCGA-DD-A73E-01A 66 years, male, white, stage:Stage I, alive, 44 days 18590.9
TCGA-ZS-A9CE-01A 79 years, female, white, stage:Stage II, alive, 1241 days 18514.4
TCGA-DD-AADA-01A 66 years, female, asian, stage:Stage I, alive, 1233 days 18398.8
TCGA-DD-AAVY-01A 56 years, male, asian, stage:Stage IIIA, alive, 1970 days 18365.6
TCGA-CC-A3MB-01A 36 years, male, asian, stage:Stage IIIA, dead, 315 days 18268.6
TCGA-ED-A97K-01A 54 years, male, asian, stage:Stage IIIA, alive, 6 days 18226.6
TCGA-DD-A4NV-01A 61 years, male, white, stage:Stage IIIA, alive, 2398 days 18209.7
TCGA-DD-A3A8-01A 75 years, male, white, stage:Stage II, dead, 11 days 18061.8
TCGA-2Y-A9GS-01A 58 years, male, white, stage:'--, dead, 724 days 18040.4
TCGA-DD-AADB-01A 51 years, male, asian, stage:Stage I, alive, 1242 days 18020.3
TCGA-DD-A4NO-01A 65 years, male, white, stage:Stage I, alive, 2245 days 17926.2
TCGA-2Y-A9GZ-01A 82 years, female, white, stage:Stage II, dead, 848 days 17897.4
TCGA-FV-A3R2-01A 75 years, male, white, stage:Stage I, dead, 194 days 17864.4
TCGA-G3-A7M5-01A 76 years, male, asian, stage:Stage I, alive, 447 days 17831.5
TCGA-5C-A9VH-01A 70 years, male, white, stage:Stage I, alive, 322 days 17829.8
TCGA-DD-AAVX-01A 38 years, male, asian, stage:Stage II, alive, 1718 days 17818.3
TCGA-ED-A8O6-01A 50 years, female, asian, stage:Stage IIIA, dead, 56 days 17714.4
TCGA-DD-AAEG-01A 59 years, female, asian, stage:Stage I, alive, 719 days 17693.6
TCGA-2Y-A9H5-01A 59 years, female, white, stage:Stage I, dead, 555 days 17663.1
TCGA-BC-A5W4-01A 69 years, male, white, stage:Stage IIIA, dead, 547 days 17627.2
TCGA-CC-A9FW-01A 68 years, male, asian, stage:Stage IIIA, alive, 248 days 17605.0
TCGA-DD-AAVP-01A 48 years, male, asian, stage:Stage I, alive, 2752 days 17510.6
TCGA-MI-A75H-01A 77 years, male, white, stage:'--, alive, 747 days 17419.6
TCGA-DD-AAD5-01A 54 years, male, asian, stage:Stage I, alive, 1345 days 17342.9
TCGA-G3-A5SI-01A 44 years, male, asian, stage:Stage II, dead, 768 days 17275.0
TCGA-GJ-A3OU-01A 59 years, male, white, stage:Stage I, alive, 879 days 17202.8
TCGA-DD-AAVS-01A 56 years, male, asian, stage:Stage I, alive, 1823 days 17136.2
TCGA-2Y-A9GV-01A 54 years, female, white, stage:Stage I, dead, 2532 days 17041.4
TCGA-RC-A7S9-01A 47 years, female, asian, stage:Stage I, alive, 640 days 17030.2
TCGA-XR-A8TE-01A 16 years, male, white, stage:Stage IIIA, alive, 925 days 17002.5
TCGA-DD-AACV-01A 53 years, male, asian, stage:Stage I, alive, 1531 days 16912.7
TCGA-FV-A496-01A 84 years, female, white, stage:Stage I, alive, 10 days 16901.9
TCGA-MI-A75E-01A 61 years, male, white, stage:Stage IIIC, alive, 507 days 16828.2
TCGA-ED-A66Y-01A 51 years, female, asian, stage:Stage IIIA, dead, 296 days 16785.7
TCGA-G3-A7M6-01A 60 years, female, white, stage:Stage I, alive, 632 days 16545.6
TCGA-DD-AAEH-01A 73 years, male, asian, stage:Stage I, alive, 784 days 16535.9
TCGA-BC-A10U-01A 69 years, male, white, stage:'--, dead, 837 days 16522.2
TCGA-DD-AAE2-01A 51 years, male, asian, stage:Stage I, alive, 638 days 16383.8
TCGA-DD-A1EE-01A 73 years, male, white, stage:Stage IIIA, dead, 349 days 16349.0
TCGA-DD-AAVR-01A 44 years, male, asian, stage:Stage I, alive, 2513 days 16318.7
TCGA-DD-A1ED-01A 68 years, male, white, stage:Stage I, alive, 2301 days 16278.7
TCGA-O8-A75V-01A 54 years, male, stage:Stage I, alive, 538 days 16271.9
TCGA-DD-AAE4-01A 49 years, female, asian, stage:Stage I, alive, 608 days 16253.3
TCGA-LG-A9QD-01A 68 years, male, white, stage:Stage IIIA, alive, 366 days 16177.6
TCGA-EP-A2KB-01A 46 years, female, white, stage:Stage I, dead, 596 days 16120.8
TCGA-DD-A116-01A 68 years, male, asian, stage:Stage IIIA, dead, 1622 days 16119.3
TCGA-DD-AACY-01A 61 years, male, asian, stage:Stage I, alive, 1450 days 16110.4
TCGA-DD-AAE1-01A 52 years, male, asian, stage:Stage I, alive, 552 days 15946.5
TCGA-CC-A8HS-01A 18 years, male, asian, stage:Stage IIIC, dead, 300 days 15914.0
TCGA-DD-A113-01A 55 years, female, white, stage:Stage II, alive, 2425 days 15839.5
TCGA-DD-AAW1-01A 55 years, male, asian, stage:Stage IIIA, alive, 1989 days 15827.8
TCGA-G3-AAV2-01A 50 years, male, white, stage:Stage I, alive, 372 days 15758.8
TCGA-CC-A3MC-01A 54 years, male, asian, stage:Stage IIIA, alive, 363 days 15706.1
TCGA-BC-A10S-01A 81 years, male, white, stage:'--, dead, 1423 days 15662.6
TCGA-G3-AAV0-01A 58 years, male, asian, stage:Stage I, alive, 476 days 15597.9
TCGA-G3-A3CK-01A 61 years, male, asian, stage:Stage I, alive, 585 days 15572.6
TCGA-DD-AACJ-01A 75 years, male, asian, stage:Stage II, alive, 2102 days 15450.3
TCGA-DD-AADK-01A 68 years, female, asian, stage:Stage II, alive, 1049 days 15350.3
TCGA-ED-A7XO-01A 29 years, male, asian, stage:Stage IIIA, alive, 427 days 15173.1
TCGA-DD-AAVZ-01A 38 years, male, asian, stage:Stage I, alive, 1900 days 15149.5
TCGA-DD-AAEI-01A 72 years, male, asian, stage:Stage I, alive, 1531 days 15128.8
TCGA-DD-AADV-01A 50 years, male, asian, stage:Stage I, alive, 574 days 15122.9
TCGA-DD-AADC-01A 53 years, male, asian, stage:Stage I, dead, 425 days 14963.2
TCGA-DD-AAE0-01A 45 years, female, asian, stage:Stage IIIA, alive, 555 days 14959.8
TCGA-DD-AADJ-01A 70 years, female, asian, stage:Stage I, alive, 1066 days 14892.9
TCGA-BD-A3EP-01A 75 years, female, black or african american, stage:Stage I, alive, 409 days 14886.5
TCGA-DD-A73F-01A 77 years, female, white, stage:Stage I, alive, 1085 days 14848.0
TCGA-RG-A7D4-01A 69 years, male, black or african american, stage:Stage II, alive, 1098 days 14582.3
TCGA-CC-A8HU-01A 39 years, female, asian, stage:Stage IIIA, dead, 344 days 14457.7
TCGA-2Y-A9HA-01A 70 years, male, white, stage:Stage II, dead, 36 days 14421.6
TCGA-ED-A627-01A 74 years, male, white, stage:Stage I, alive, 423 days 14297.7
TCGA-ZP-A9D1-01A 56 years, female, white, stage:'--, alive, 21 days 14209.1
TCGA-DD-AACS-01A 39 years, male, asian, stage:Stage I, alive, 1804 days 14193.6
TCGA-DD-AAEE-01A 55 years, male, asian, stage:Stage I, alive, 810 days 14163.4
TCGA-UB-A7MF-01A 56 years, male, white, stage:Stage IIIA, dead, 214 days 14134.3
TCGA-DD-AACP-01A 64 years, male, asian, stage:Stage I, alive, 415 days 13968.8
TCGA-DD-AAD0-01A 73 years, female, asian, stage:Stage I, alive, 137 days 13957.9
TCGA-DD-AADQ-01A 59 years, male, asian, stage:Stage II, alive, 436 days 13868.0
TCGA-DD-AA3A-01A 81 years, female, white, stage:Stage I, dead, 410 days 13743.9
TCGA-G3-AAV5-01A 67 years, male, white, stage:Stage II, alive, 354 days 13743.3
TCGA-G3-AAV3-01A 58 years, female, white, stage:Stage II, alive, 412 days 13680.9
TCGA-DD-AAVQ-01A 38 years, male, asian, stage:Stage I, alive, 2728 days 13670.4
TCGA-5R-AA1C-01A 57 years, male, white, stage:Stage II, alive, 520 days 13608.3
TCGA-G3-A25V-01A 68 years, male, white, stage:Stage I, alive, 860 days 13604.0
TCGA-DD-A1EH-01A 23 years, male, white, stage:Stage III, alive, 1495 days 13595.1
TCGA-EP-A3RK-01A 73 years, male, white, stage:Stage IIIA, alive, 363 days 13575.7
TCGA-FV-A3I0-01A 76 years, female, white, stage:Stage II, alive, 848 days 13561.9
TCGA-2Y-A9GY-01A 64 years, female, white, stage:Stage II, dead, 757 days 13555.1
TCGA-K7-A5RF-01A 64 years, male, white, stage:Stage I, alive, 631 days 13501.0
TCGA-G3-A3CG-01A 80 years, male, white, stage:Stage I, alive, 673 days 13454.2
TCGA-K7-A5RG-01A 66 years, male, black or african american, stage:Stage I, alive, 519 days 13366.0
TCGA-DD-A73B-01A 72 years, female, white, stage:Stage I, dead, 283 days 13227.7
TCGA-DD-AACL-01A 66 years, female, asian, stage:Stage I, dead, 107 days 13146.7
TCGA-LG-A9QC-01A 48 years, male, white, stage:Stage I, alive, 425 days 13115.2
TCGA-DD-AAD1-01A 51 years, female, asian, stage:Stage I, alive, 564 days 13092.9
TCGA-ED-A8O5-01A 59 years, female, asian, stage:Stage IIIA, alive, 406 days 13060.3
TCGA-DD-AACO-01A 40 years, male, asian, stage:Stage I, alive, 1876 days 13045.5
TCGA-2Y-A9GT-01A 51 years, male, white, stage:Stage I, dead, 1624 days 12964.3
TCGA-GJ-A6C0-01A 75 years, female, white, stage:Stage II, dead, 31 days 12945.4
TCGA-BC-A69I-01A 69 years, male, white, stage:Stage I, alive, 387 days 12858.5
TCGA-ED-A7XP-01A 53 years, female, asian, stage:Stage II, alive, 400 days 12799.7
TCGA-2Y-A9HB-01A 66 years, male, stage:Stage I, alive, 260 days 12775.8
TCGA-DD-AAW0-01A 54 years, male, asian, stage:Stage I, alive, 2015 days 12736.3
TCGA-DD-AAC9-01A 51 years, male, asian, stage:Stage I, alive, 347 days 12687.5
TCGA-2Y-A9H9-01A 70 years, male, white, stage:Stage I, alive, 697 days 12664.7
TCGA-DD-A115-01A 53 years, male, white, stage:Stage IIIA, dead, 2542 days 12641.5
TCGA-DD-A3A3-01A 45 years, male, asian, stage:Stage I, dead, 535 days 12582.4
TCGA-DD-A114-01A 42 years, male, black or african american, stage:Stage II, dead, 1149 days 12557.6
TCGA-DD-A4NR-01A 85 years, female, white, stage:Stage I, dead, 9 days 12530.5
TCGA-CC-A7IG-01A 47 years, male, asian, stage:Stage II, dead, 299 days 12527.0
TCGA-GJ-A9DB-01A 68 years, male, white, stage:Stage I, dead, 67 days 12505.9
TCGA-DD-A1EI-01A 46 years, male, asian, stage:Stage I, alive, 183 days 12430.7
TCGA-DD-A1EF-01A 57 years, female, white, stage:Stage I, dead, 394 days 12429.0
TCGA-DD-AAEK-01A 51 years, male, asian, stage:Stage II, alive, 1067 days 12314.0
TCGA-DD-A3A7-01A 67 years, male, stage:Stage IIIB, dead, 419 days 12311.9
TCGA-3K-AAZ8-01A 65 years, male, black or african american, stage:Stage IIIB, alive, 396 days 12275.8
TCGA-HP-A5N0-01A 90 years, female, stage:'--, dead, 752 days 12241.4
TCGA-ZP-A9CY-01A 66 years, female, white, stage:'--, alive, 782 days 12091.2
TCGA-DD-A3A9-01A 64 years, female, white, stage:Stage IVB, dead, 931 days 12077.0
TCGA-ZP-A9CV-01A 59 years, male, white, stage:'--, dead, 1088 days 12072.0
TCGA-BC-A8YO-01A 66 years, female, white, stage:Stage IIIC, alive, 562 days 12062.7
TCGA-G3-A25Y-01A 52 years, female, asian, stage:Stage I, dead, 452 days 11932.9
TCGA-XR-A8TG-01A 58 years, male, white, stage:Stage I, alive, 898 days 11841.6
TCGA-BC-A10Y-01A 76 years, male, white, stage:'--, dead, 711 days 11807.5
TCGA-DD-A4NN-01A 56 years, female, white, stage:Stage I, dead, 899 days 11728.9
TCGA-DD-AADI-01A 43 years, female, asian, stage:Stage I, alive, 1085 days 11704.2
TCGA-DD-AAVV-01A 56 years, male, asian, stage:Stage II, alive, 2455 days 11596.5
TCGA-DD-A39Z-01A 43 years, female, stage:Stage II, dead, 601 days 11541.8
TCGA-RC-A7SK-01A 59 years, male, asian, stage:Stage I, alive, 472 days 11463.6
TCGA-DD-A3A5-01A 66 years, female, white, stage:Stage III, dead, 3125 days 11429.9
TCGA-5C-AAPD-01A 61 years, male, asian, stage:Stage II, alive, 20 days 11352.4
TCGA-DD-AAE7-01A 72 years, male, asian, stage:Stage I, alive, 644 days 11291.8
TCGA-G3-A7M9-01A 70 years, male, white, stage:Stage IIIB, dead, 56 days 11286.9
TCGA-QA-A7B7-01A 48 years, male, black or african american, stage:Stage II, alive, 94 days 11263.0
TCGA-FV-A4ZQ-01A 52 years, male, white, stage:Stage I, alive, 12 days 11152.4
TCGA-EP-A12J-01A 62 years, male, black or african american, stage:Stage I, alive, 570 days 11095.8
TCGA-G3-AAV7-01A 38 years, male, asian, stage:Stage II, alive, 361 days 11062.0
TCGA-DD-AADP-01A 45 years, male, asian, stage:Stage I, alive, 458 days 11035.5
TCGA-DD-AACB-01A 74 years, female, asian, stage:Stage I, alive, 2324 days 10993.5
TCGA-DD-AACU-01A 59 years, male, asian, stage:Stage I, alive, 1567 days 10923.6
TCGA-FV-A2QR-01A 75 years, male, white, stage:Stage I, dead, 581 days 10891.2
TCGA-2Y-A9H7-01A 81 years, female, white, stage:Stage I, alive, 1168 days 10883.2
TCGA-DD-AACK-01A 70 years, male, asian, stage:Stage I, alive, 9 days 10878.3
TCGA-DD-A73C-01A 65 years, female, white, stage:Stage IIIA, alive, 701 days 10762.9
TCGA-DD-AACN-01A 32 years, male, asian, stage:Stage I, alive, 1302 days 10726.8
TCGA-CC-5259-01A 60 years, female, asian, stage:Stage IIIC, alive, 250 days 10553.0
TCGA-ZP-A9CZ-01A 72 years, male, asian, stage:'--, alive, 706 days 10511.6
TCGA-K7-A6G5-01A 66 years, male, white, stage:Stage I, alive, 512 days 10462.6
TCGA-EP-A2KA-01A 52 years, female, white, stage:Stage IIIA, dead, 627 days 10414.4
TCGA-BW-A5NO-01A 50 years, male, black or african american, stage:Stage IIIA, alive, 20 days 10401.9
TCGA-DD-A1EJ-01A 71 years, female, white, stage:Stage IIIC, dead, 1005 days 10391.0
TCGA-KR-A7K7-01A 61 years, female, white, stage:Stage II, alive, 951 days 10387.3
TCGA-BC-A217-01A 75 years, female, white, stage:Stage II, dead, 1397 days 10357.2
TCGA-DD-AAVW-01A 35 years, male, asian, stage:Stage I, alive, 2317 days 10325.4
TCGA-UB-A7ME-01A 51 years, male, asian, stage:Stage I, alive, 486 days 10281.4
TCGA-4R-AA8I-01A 66 years, male, white, stage:Stage II, dead, 262 days 10261.5
TCGA-MI-A75I-01A 61 years, male, black or african american, stage:'--, alive, 630 days 10191.4
TCGA-DD-AADS-01A 63 years, male, asian, stage:Stage I, alive, 474 days 10188.0
TCGA-UB-A7MA-01A 62 years, female, white, stage:Stage II, alive, 848 days 10171.3
TCGA-ZP-A9D2-01A 51 years, male, white, stage:'--, dead, 765 days 10169.3
TCGA-YA-A8S7-01A 68 years, male, white, stage:Stage IIIA, dead, 412 days 10127.3
TCGA-G3-A25S-01A 64 years, male, white, stage:Stage I, dead, 416 days 10050.7
TCGA-UB-A7MB-01A 24 years, male, white, stage:Stage II, alive, 601 days 10049.8
TCGA-T1-A6J8-01A 68 years, male, white, stage:'--, alive, 23 days 10032.1
TCGA-DD-AACC-01A 61 years, male, asian, stage:Stage I, dead, 1685 days 10020.2
TCGA-G3-AAUZ-01A 48 years, male, stage:Stage I, alive, 480 days 9661.7
TCGA-DD-AACH-01A 69 years, male, asian, stage:Stage II, dead, 195 days 9600.4
TCGA-2Y-A9H1-01A 58 years, male, white, stage:Stage I, dead, 1229 days 9502.3
TCGA-CC-A5UE-01A 48 years, male, asian, stage:Stage IIIB, dead, 272 days 9472.0
TCGA-DD-A1EG-01A 76 years, male, white, stage:Stage I, dead, 1372 days 9444.4
TCGA-DD-AACI-01A 69 years, male, asian, stage:Stage II, alive, 1618 days 9301.0
TCGA-G3-AAV6-01A 53 years, female, white, stage:Stage IIIA, dead, 65 days 9279.2
TCGA-G3-A25Z-01A 58 years, male, asian, stage:Stage I, alive, 655 days 9152.7
TCGA-DD-AADY-01A 55 years, female, asian, stage:Stage I, alive, 555 days 8925.6
TCGA-DD-AAD3-01A 43 years, male, asian, stage:Stage I, alive, 1295 days 8900.4
TCGA-CC-5263-01A 35 years, male, asian, stage:Stage IIIA, dead, 129 days 8855.3
TCGA-UB-A7MD-01A 67 years, male, black or african american, stage:Stage I, dead, 52 days 8812.9
TCGA-FV-A2QQ-01A 80 years, male, white, stage:Stage I, alive, 729 days 8644.4
TCGA-CC-5264-01A 71 years, male, asian, stage:Stage IIIA, dead, 102 days 8473.4
TCGA-FV-A495-01A 51 years, female, white, stage:Stage II, alive, 1 days 8421.3
TCGA-UB-A7MC-01A 59 years, male, white, stage:Stage IIIA, alive, 500 days 8263.3
TCGA-DD-A11D-01A 57 years, female, white, stage:Stage I, dead, 1560 days 8232.1
TCGA-DD-A119-01A 40 years, male, asian, stage:Stage IV, dead, 223 days 8221.0
TCGA-CC-A7IJ-01A 56 years, male, asian, stage:Stage II, alive, 382 days 8157.6
TCGA-CC-A1HT-01A 50 years, male, asian, stage:Stage IIIA, dead, 101 days 8045.5
TCGA-DD-A73G-01A 73 years, female, white, stage:Stage I, alive, 3478 days 7812.8
TCGA-MI-A75G-01A 63 years, male, white, stage:Stage II, alive, 698 days 7727.7
TCGA-DD-AACG-01A 52 years, male, asian, stage:Stage II, dead, 469 days 7709.3
TCGA-ES-A2HT-01A 54 years, male, black or african american, stage:Stage I, dead, 438 days 7590.4
TCGA-DD-A39X-01A 78 years, female, white, stage:Stage I, dead, 1694 days 7463.0
TCGA-DD-AAVU-01A 46 years, male, asian, stage:Stage II, alive, 2202 days 7402.3
TCGA-LG-A6GG-01A 79 years, female, white, stage:Stage II, alive, 387 days 7260.7
TCGA-DD-AADM-01A 58 years, male, asian, stage:Stage II, dead, 12 days 7156.3
TCGA-DD-AAC8-01A 72 years, male, asian, stage:Stage I, dead, 16 days 7065.2
TCGA-ED-A459-01A 47 years, male, asian, stage:Stage II, alive, 910 days 7053.3
TCGA-CC-5262-01A 67 years, male, asian, stage:Stage IIIC, dead, 103 days 7043.3
TCGA-DD-A3A1-01A 65 years, male, stage:Stage IIIA, dead, 233 days 7038.9
TCGA-CC-A7II-01A 54 years, male, asian, stage:Stage IIIA, alive, 399 days 6904.2
TCGA-DD-A11C-01A 69 years, male, white, stage:Stage I, alive, 662 days 6681.7
TCGA-CC-A3M9-01A 45 years, male, asian, stage:Stage IIIA, dead, 300 days 6606.1
TCGA-G3-A25X-01A 73 years, male, asian, stage:Stage II, alive, 1779 days 6523.1
TCGA-BC-A10W-01A 50 years, male, asian, stage:'--, dead, 91 days 6233.4
TCGA-FV-A3I1-01A 81 years, female, white, stage:Stage II, dead, 247 days 5782.9
TCGA-DD-A39Y-01A 67 years, male, asian, stage:Stage I, dead, 171 days 5709.3
TCGA-CC-5261-01A 44 years, male, asian, stage:Stage II, dead, 97 days 5499.7
TCGA-RC-A6M6-01A 75 years, male, white, stage:Stage II, alive, 9 days 5324.4
TCGA-ES-A2HS-01A 80 years, male, white, stage:Stage I, dead, 688 days 5019.4
TCGA-DD-AADN-01A 59 years, male, asian, stage:Stage I, alive, 898 days 4528.3
TCGA-ED-A5KG-01A 60 years, female, asian, stage:Stage II, alive, 854 days 3834.3
TCGA-DD-AADO-01A 55 years, male, asian, stage:Stage I, alive, 453 days 3628.8
TCGA-CC-A123-01A 24 years, female, asian, stage:Stage IIIA, alive, 219 days 3605.8
TCGA-FV-A4ZP-01A 78 years, male, white, stage:Stage IIIA, dead, 2486 days 3459.3
TCGA-DD-A39V-01A 77 years, male, white, stage:Stage II, dead, 643 days 3322.1
TCGA-BC-A69H-01A 64 years, male, white, stage:Stage II, alive, 444 days 3003.5
TCGA-CC-5258-01A 48 years, male, asian, stage:Stage II, dead, 129 days 2782.4
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

  Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples 330
Samples
Sample ID Sample type nRPX
471 Tumor N/A
351 Tumor N/A
472 Normal N/A
231 Tumor N/A
352 Normal N/A
473 Tumor N/A
111 Normal N/A
232 Normal N/A
353 Tumor N/A
474 Normal N/A
112 Tumor N/A
354 Normal N/A
113 Tumor N/A
355 Tumor N/A
114 Normal N/A
356 Normal N/A
477 Tumor N/A
357 Tumor N/A
478 Normal N/A
358 Normal N/A
911 Tumor N/A
912 Normal N/A
913 Tumor N/A
914 Normal N/A
915 Tumor N/A
916 Normal N/A
917 Tumor N/A
918 Normal N/A
481 Tumor N/A
361 Tumor N/A
482 Normal N/A
362 Normal N/A
483 Tumor N/A
363 Tumor N/A
484 Normal N/A
364 Normal N/A
123 Tumor N/A
365 Tumor N/A
124 Normal N/A
366 Normal N/A
487 Tumor N/A
125 Tumor N/A
367 Tumor N/A
488 Normal N/A
126 Normal N/A
368 Normal N/A
127 Tumor N/A
128 Normal N/A
921 Tumor N/A
922 Normal N/A
923 Tumor N/A
924 Normal N/A
925 Tumor N/A
926 Normal N/A
491 Tumor N/A
492 Normal N/A
493 Tumor N/A
131 Tumor N/A
494 Normal N/A
132 Normal N/A
375 Tumor N/A
376 Normal N/A
497 Tumor N/A
135 Tumor N/A
498 Normal N/A
136 Normal N/A
257 Tumor N/A
137 Tumor N/A
258 Normal N/A
138 Normal N/A
813 Tumor N/A
814 Normal N/A
815 Tumor N/A
816 Normal N/A
937 Tumor N/A
817 Tumor N/A
938 Normal N/A
818 Normal N/A
261 Tumor N/A
141 Tumor N/A
262 Normal N/A
383 Tumor N/A
142 Normal N/A
384 Normal N/A
385 Tumor N/A
386 Normal N/A
145 Tumor N/A
387 Tumor N/A
146 Normal N/A
267 Tumor N/A
388 Normal N/A
147 Tumor N/A
268 Normal N/A
148 Normal N/A
943 Tumor N/A
823 Tumor N/A
944 Normal N/A
824 Normal N/A
1022 Normal N/A
1021 Tumor N/A
391 Tumor N/A
271 Tumor N/A
392 Normal N/A
272 Normal N/A
393 Tumor N/A
394 Normal N/A
395 Tumor N/A
396 Normal N/A
277 Tumor N/A
1016 Normal N/A
278 Normal N/A
1015 Tumor N/A
1014 Normal N/A
951 Tumor N/A
1013 Tumor N/A
952 Normal N/A
953 Tumor N/A
954 Normal N/A
713 Tumor N/A
955 Tumor N/A
714 Normal N/A
956 Normal N/A
715 Tumor N/A
957 Tumor N/A
716 Normal N/A
958 Normal N/A
1032 Normal N/A
1031 Tumor N/A
161 Tumor N/A
162 Normal N/A
283 Tumor N/A
284 Normal N/A
285 Tumor N/A
286 Normal N/A
1028 Normal N/A
1027 Tumor N/A
1026 Normal N/A
1025 Tumor N/A
721 Tumor N/A
963 Tumor N/A
722 Normal N/A
964 Normal N/A
723 Tumor N/A
965 Tumor N/A
724 Normal N/A
966 Normal N/A
967 Tumor N/A
968 Normal N/A
727 Tumor N/A
728 Normal N/A
1044 Normal N/A
1043 Tumor N/A
1042 Normal N/A
1041 Tumor N/A
171 Tumor N/A
172 Normal N/A
297 Tumor N/A
298 Normal N/A
851 Tumor N/A
852 Normal N/A
975 Tumor N/A
976 Normal N/A
977 Tumor N/A
615 Tumor N/A
857 Tumor N/A
978 Normal N/A
616 Normal N/A
737 Tumor N/A
858 Normal N/A
617 Tumor N/A
738 Normal N/A
618 Normal N/A
185 Tumor N/A
186 Normal N/A
187 Tumor N/A
188 Normal N/A
981 Tumor N/A
861 Tumor N/A
982 Normal N/A
741 Tumor N/A
862 Normal N/A
983 Tumor N/A
742 Normal N/A
863 Tumor N/A
984 Normal N/A
1046 Normal N/A
743 Tumor N/A
864 Normal N/A
1045 Tumor N/A
744 Normal N/A
865 Tumor N/A
745 Tumor N/A
866 Normal N/A
746 Normal N/A
867 Tumor N/A
868 Normal N/A
627 Tumor N/A
628 Normal N/A
191 Tumor N/A
192 Normal N/A
195 Tumor N/A
196 Normal N/A
873 Tumor N/A
874 Normal N/A
513 Tumor N/A
755 Tumor N/A
514 Normal N/A
635 Tumor N/A
756 Normal N/A
877 Tumor N/A
515 Tumor N/A
636 Normal N/A
878 Normal N/A
516 Normal N/A
517 Tumor N/A
518 Normal N/A
881 Tumor N/A
882 Normal N/A
641 Tumor N/A
883 Tumor N/A
642 Normal N/A
884 Normal N/A
523 Tumor N/A
524 Normal N/A
525 Tumor N/A
526 Normal N/A
647 Tumor N/A
527 Tumor N/A
648 Normal N/A
528 Normal N/A
411 Tumor N/A
412 Normal N/A
533 Tumor N/A
413 Tumor N/A
534 Normal N/A
414 Normal N/A
535 Tumor N/A
777 Tumor N/A
415 Tumor N/A
536 Normal N/A
778 Normal N/A
416 Normal N/A
537 Tumor N/A
538 Normal N/A
661 Tumor N/A
662 Normal N/A
421 Tumor N/A
663 Tumor N/A
422 Normal N/A
664 Normal N/A
785 Tumor N/A
423 Tumor N/A
665 Tumor N/A
786 Normal N/A
424 Normal N/A
545 Tumor N/A
666 Normal N/A
425 Tumor N/A
546 Normal N/A
426 Normal N/A
427 Tumor N/A
428 Normal N/A
671 Tumor N/A
672 Normal N/A
431 Tumor N/A
311 Tumor N/A
432 Normal N/A
553 Tumor N/A
312 Normal N/A
433 Tumor N/A
554 Normal N/A
313 Tumor N/A
434 Normal N/A
314 Normal N/A
435 Tumor N/A
436 Normal N/A
557 Tumor N/A
558 Normal N/A
563 Tumor N/A
443 Tumor N/A
564 Normal N/A
685 Tumor N/A
444 Normal N/A
686 Normal N/A
445 Tumor N/A
446 Normal N/A
567 Tumor N/A
447 Tumor N/A
568 Normal N/A
327 Tumor N/A
448 Normal N/A
328 Normal N/A
571 Tumor N/A
451 Tumor N/A
572 Normal N/A
331 Tumor N/A
452 Normal N/A
573 Tumor N/A
211 Tumor N/A
332 Normal N/A
574 Normal N/A
695 Tumor N/A
212 Normal N/A
696 Normal N/A
213 Tumor N/A
455 Tumor N/A
697 Tumor N/A
214 Normal N/A
456 Normal N/A
698 Normal N/A
217 Tumor N/A
218 Normal N/A
461 Tumor N/A
341 Tumor N/A
462 Normal N/A
221 Tumor N/A
342 Normal N/A
463 Tumor N/A
222 Normal N/A
343 Tumor N/A
464 Normal N/A
223 Tumor N/A
344 Normal N/A
465 Tumor N/A
224 Normal N/A
466 Normal N/A
467 Tumor N/A
468 Normal N/A
227 Tumor N/A
228 Normal N/A
Show allShow less
LIVER CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

 

Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.


Antibody HPA042788
 Staining
  High
  Medium
  Low
  Not detected
 Intensity
  Strong
  Moderate
  Weak
  Negative
 Quantity
  >75%
  75%-25%
  <25%
  None
 Location
  Nuclear
  Cytoplasmic/membranous
  Cytoplasmic/membranous,nuclear
  None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS

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