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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MT-CO3 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
18453.3
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
71890.0
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
70712.5
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
66630.5
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
58968.7
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
48199.4
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
47921.0
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
44404.3
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
44175.0
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
42563.3
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
40422.9
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
39995.2
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
39792.7
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
39544.3
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
38615.5
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
38310.2
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
38005.7
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
37943.9
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
36702.0
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
36558.2
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
36193.0
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
35931.3
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
34782.4
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
34613.5
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
33177.3
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
32587.4
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
32163.6
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
31941.1
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
31762.1
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
31451.7
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
31185.5
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
30660.0
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
30471.0
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
30397.1
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
30240.9
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
29932.9
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
29726.7
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
29679.8
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
29576.2
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
29555.9
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
29376.9
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
28779.4
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
28458.8
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
28342.1
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
28336.9
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
28224.5
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
28223.9
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
28216.6
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
28206.0
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
28196.3
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
28101.5
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
27836.0
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
27519.2
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
27376.8
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
27342.5
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
27276.2
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
27073.6
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
27031.4
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
26871.0
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
26825.0
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
26727.7
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
26662.8
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
26405.6
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
26063.9
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
26006.9
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
25717.8
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
25695.8
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
25678.3
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
25666.4
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
25576.7
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
25177.5
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
24911.8
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
24747.1
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
24726.3
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
24707.3
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
24701.2
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
24318.8
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
24317.9
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
24098.9
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
24031.1
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
24021.8
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
23768.9
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
23601.3
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
23258.1
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
23223.3
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
23151.1
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
23104.4
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
23027.8
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
22976.4
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
22920.4
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
22899.5
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
22821.5
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
22815.1
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
22815.0
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
22801.3
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
22672.1
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
22524.8
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
22460.2
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
22230.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
22091.5
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
22022.0
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
21892.8
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
21841.7
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
21717.7
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
21674.9
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
21646.6
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
21498.8
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
21491.1
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
21422.9
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
21411.5
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
21145.3
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
21113.9
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
20996.5
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
20964.6
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
20940.3
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
20882.6
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
20877.8
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
20849.3
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
20831.4
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
20779.7
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
20763.2
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
20629.3
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
20588.7
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
20284.4
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
20215.8
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
20207.1
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
20206.5
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
20137.2
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
20004.3
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
19987.8
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
19931.8
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
19835.3
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
19803.0
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
19776.6
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
19773.6
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
19679.1
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
19645.1
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
19614.8
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19454.5
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
19378.2
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
19377.4
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
19059.4
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
19029.4
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
18985.9
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
18948.1
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
18938.3
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
18885.3
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
18723.1
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
18590.9
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
18514.4
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
18398.8
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
18365.6
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
18268.6
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
18226.6
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
18209.7
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
18061.8
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
18040.4
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
18020.3
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
17926.2
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
17897.4
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
17864.4
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
17831.5
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
17829.8
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
17818.3
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
17714.4
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
17693.6
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
17663.1
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
17627.2
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
17605.0
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
17510.6
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
17419.6
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
17342.9
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
17275.0
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
17202.8
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
17136.2
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
17041.4
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
17030.2
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
17002.5
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
16912.7
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
16901.9
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
16828.2
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
16785.7
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
16545.6
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
16535.9
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
16522.2
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
16383.8
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
16349.0
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
16318.7
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
16278.7
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
16271.9
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
16253.3
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
16177.6
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
16120.8
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
16119.3
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
16110.4
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
15946.5
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
15914.0
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
15839.5
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
15827.8
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
15758.8
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
15706.1
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
15662.6
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
15597.9
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
15572.6
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
15450.3
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
15350.3
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
15173.1
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
15149.5
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
15128.8
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
15122.9
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
14963.2
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
14959.8
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
14892.9
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
14886.5
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
14848.0
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
14582.3
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
14457.7
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
14421.6
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
14297.7
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
14209.1
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
14193.6
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
14163.4
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
14134.3
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
13968.8
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
13957.9
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
13868.0
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
13743.9
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
13743.3
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
13680.9
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
13670.4
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
13608.3
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
13604.0
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
13595.1
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
13575.7
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
13561.9
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
13555.1
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
13501.0
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
13454.2
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
13366.0
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
13227.7
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
13146.7
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
13115.2
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
13092.9
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
13060.3
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
13045.5
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
12964.3
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
12945.4
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
12858.5
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
12799.7
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
12775.8
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
12736.3
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
12687.5
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
12664.7
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
12641.5
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
12582.4
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
12557.6
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
12530.5
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
12527.0
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
12505.9
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
12430.7
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
12429.0
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
12314.0
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
12311.9
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12275.8
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
12241.4
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
12091.2
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
12077.0
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
12072.0
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
12062.7
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
11932.9
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
11841.6
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
11807.5
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
11728.9
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
11704.2
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
11596.5
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
11541.8
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
11463.6
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
11429.9
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
11352.4
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
11291.8
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
11286.9
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
11263.0
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
11152.4
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
11095.8
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
11062.0
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
11035.5
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
10993.5
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
10923.6
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
10891.2
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
10883.2
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
10878.3
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
10762.9
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
10726.8
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
10553.0
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
10511.6
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
10462.6
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
10414.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10401.9
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
10391.0
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
10387.3
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
10357.2
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
10325.4
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
10281.4
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
10261.5
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
10191.4
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
10188.0
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
10171.3
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
10169.3
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
10127.3
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
10050.7
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
10049.8
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
10032.1
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
10020.2
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
9661.7
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
9600.4
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
9502.3
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
9472.0
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
9444.4
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
9301.0
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
9279.2
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
9152.7
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
8925.6
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
8900.4
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
8855.3
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
8812.9
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
8644.4
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
8473.4
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
8421.3
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
8263.3
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
8232.1
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
8221.0
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
8157.6
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
8045.5
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
7812.8
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
7727.7
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
7709.3
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
7590.4
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
7463.0
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
7402.3
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
7260.7
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
7156.3
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
7065.2
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
7053.3
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
7043.3
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
7038.9
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
6904.2
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
6681.7
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
6606.1
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
6523.1
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
6233.4
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
5782.9
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
5709.3
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
5499.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
5324.4
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
5019.4
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
4528.3
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
3834.3
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
3628.8
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
3605.8
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
3459.3
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
3322.1
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
3003.5
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.