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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:59.2 nTPM
HPA Brain:48.0 nTPM
GTEx:59.2 nTPM
FANTOM5:8.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 25.2
1981 Female, age 72, midline 40.8
2048 Male, age 55, midline 32.6
2194 Female, age 79, both hemispheres 19.0
2816 Male, age 47, midline 17.2
2565 Male, age 75, midline 16.4
Cervical spinal cord, dorsal horn
nTPM: 48.0
2069 Male, age 47, both hemispheres 80.2
2721 Male, age 90, both hemispheres 56.3
2297 Male, age 75, both hemispheres 55.9
1877 Male, age 55, unknown 39.7
2173 Female, age 72, unknown 34.7
2296 Male, age 66, both hemispheres 21.1
Cervical spinal cord, ventral horn
nTPM: 37.6
2098 Female, age 72, unknown 69.5
2809 Male, age 90, both hemispheres 50.8
2295 Male, age 66, both hemispheres 42.5
2480 Male, age 75, both hemispheres 26.1
2068 Male, age 55, unknown 23.5
2820 Female, age 79, both hemispheres 13.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 59.2
Samples: 159

Max nTPM: 532.5
Min nTPM: 1.0
Std nTPM: 73.8
Median nTPM: 32.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 532.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 405.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 362.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 288.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 250.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 244.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 206.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 188.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 184.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 177.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 176.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 171.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 165.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 161.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 155.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 154.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 114.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 114.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 108.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 105.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 101.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 99.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 94.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 94.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 92.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 91.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 86.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 84.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 83.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 82.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 78.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 77.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 76.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 74.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 74.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 73.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 71.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 69.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 67.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 66.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 65.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 64.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 64.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 64.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 62.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 61.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 61.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 55.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 54.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 53.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 50.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 48.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 48.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 47.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 46.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 46.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 46.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 45.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 45.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 45.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 45.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 44.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 43.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 42.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 41.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 40.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 40.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 39.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 39.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 36.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 35.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 35.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 35.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 34.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 34.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 32.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 32.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 31.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 31.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 30.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 30.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 29.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 29.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 29.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 29.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 28.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 27.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 26.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 26.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 26.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 26.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 26.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 25.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 25.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 25.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 24.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 24.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 24.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 24.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 24.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 23.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 23.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 23.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 23.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 23.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 22.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 22.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 21.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 21.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 21.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 21.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 21.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 21.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 21.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 20.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 19.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 19.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 19.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 19.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 18.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 18.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 18.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 18.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 17.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 17.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 17.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 16.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 16.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 16.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 15.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 14.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 14.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 13.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 13.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 13.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 13.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 12.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 11.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 11.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 10.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 10.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 10.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 9.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 9.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 9.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 8.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 8.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 7.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 7.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 6.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 5.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 4.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 8.9
FF:10159-103A6 76 years, female 16.3
FF:10181-103D1 60 years, female 1.5

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