We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
GDI1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • GDI1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:289.3 nTPM
FANTOM5:325.7 Scaled Tags Per Million
Pig:478.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049290Antibody HPA057668Antibody CAB012979
Glial cells MediumNot detectedLow
Neuronal cells MediumMediumMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

289.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 289.3
Samples: 246

Max nTPM: 464.6
Min nTPM: 157.2
Std nTPM: 59.6
Median nTPM: 286.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 464.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 433.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 432.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 417.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 412.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 411.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 409.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 405.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 404.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 403.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 400.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 393.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 393.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 388.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 386.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 385.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 382.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 380.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 380.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 380.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 380.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 379.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 372.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 372.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 368.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 367.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 367.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 365.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 363.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 361.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 359.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 357.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 357.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 357.4
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 356.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 356.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 349.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 348.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 347.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 347.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 347.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 347.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 345.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 345.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 344.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 344.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 344.5
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 343.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 342.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 341.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 341.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 339.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 339.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 338.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 338.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 335.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 333.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 332.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 332.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 332.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 332.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 331.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 330.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 329.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 328.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 327.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 326.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 326.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 326.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 325.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 325.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 324.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 324.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 322.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 321.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 321.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 321.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 321.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 320.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 319.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 319.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 318.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 317.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 316.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 316.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 314.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 314.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 314.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 313.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 310.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 306.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 306.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 306.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 305.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 304.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 304.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 303.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 302.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 301.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 301.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 300.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 299.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 298.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 297.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 297.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 297.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 295.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 295.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 295.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 294.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 294.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 293.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 292.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 292.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 292.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 292.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 291.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 291.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 291.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 290.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 287.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 287.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 286.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 286.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 284.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 282.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 282.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 280.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 280.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 280.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 280.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 279.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 279.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 279.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 278.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 277.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 277.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 276.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 275.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 274.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 274.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 274.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 273.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 273.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 272.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 271.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 270.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 270.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 269.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 269.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 268.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 268.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 268.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 266.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 265.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 264.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 264.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 263.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 263.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 263.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 263.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 263.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 262.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 259.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 258.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 255.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 255.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 254.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 254.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 254.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 253.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 253.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 253.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 251.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 251.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 251.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 249.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 249.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 249.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 249.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 249.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 248.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 247.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 247.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 246.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 246.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 246.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 245.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 245.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 245.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 243.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 243.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 243.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 241.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 241.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 240.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 236.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 236.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 235.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 234.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 234.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 234.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 228.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 228.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 227.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 227.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 226.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 226.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 225.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 222.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 220.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 220.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 219.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 219.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 218.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 214.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 214.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 213.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 213.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 212.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 210.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 210.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 209.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 206.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 204.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 204.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 203.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 202.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 201.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 201.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 200.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 198.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 198.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 196.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 196.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 195.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 193.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 193.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 190.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 187.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 185.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 184.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 177.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 169.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 165.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 157.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

325.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 325.7
FF:10164-103B2 76 years, female 325.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.5
Pig sample Sample description nTPM
Caudate
nTPM: 478.5
Samples: 4

Max nTPM: 564.2
Min nTPM: 400.2
Sample A Female 400.2
Sample B Female 511.9
Sample C Male 564.2
Sample D Male 437.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org