We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TCEAL6
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TCEAL6
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:53.3 nTPM
HPA Brain:39.5 nTPM
GTEx:53.3 nTPM
FANTOM5:15.7 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.5
Sample id Sample description nTPM
Amygdala
nTPM: 31.5
1987 Female, age 91, left hemisphere 34.1
2514 Male, age 75, right hemisphere 34.1
2517 Female, age 94, left hemisphere 32.1
2814 Male, age 76, right hemisphere 31.8
2695 Female, age 67, right hemisphere 25.2
Basal amygdala
nTPM: 34.8
2243 Female, age 91, right hemisphere 50.2
2685 Female, age 94, left hemisphere 37.8
2110 Male, age 80, left hemisphere 35.4
1955 Male, age 76, both hemispheres 32.7
2609 Male, age 75, right hemisphere 28.4
2827 Female, age 67, right hemisphere 24.2
Central amygdala
nTPM: 35.9
2701 Female, age 91, right hemisphere 45.2
2239 Male, age 80, left hemisphere 43.7
2515 Male, age 75, right hemisphere 33.9
1905 Male, age 76, both hemispheres 30.1
2826 Female, age 94, left hemisphere 26.3
Corticomedial amygdala
nTPM: 39.5
2242 Female, age 91, right hemisphere 48.4
2535 Female, age 67, right hemisphere 47.4
2240 Male, age 76, both hemispheres 40.5
2829 Male, age 80, left hemisphere 39.0
2429 Female, age 94, left hemisphere 37.2
2428 Male, age 75, right hemisphere 24.6
Lateral amygdala
nTPM: 28.1
2255 Female, age 91, right hemisphere 36.5
2534 Female, age 94, left hemisphere 33.2
2256 Male, age 80, left hemisphere 32.3
1883 Male, age 76, both hemispheres 30.9
2516 Male, age 75, right hemisphere 23.5
2830 Female, age 67, right hemisphere 12.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 53.3
Samples: 152

Max nTPM: 158.1
Min nTPM: 7.0
Std nTPM: 24.6
Median nTPM: 47.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 158.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 139.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 125.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 114.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 111.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 109.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 105.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 101.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 97.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 96.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 96.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 93.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 91.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 88.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 85.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 84.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 80.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 80.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 78.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 78.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 76.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 76.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 76.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 76.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 74.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 74.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 73.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 73.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 72.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 69.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 69.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 68.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 67.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 65.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 64.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 63.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 63.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 63.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 62.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 62.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 61.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 61.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 61.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 60.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 59.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 59.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 58.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 57.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 57.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 57.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 55.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 54.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 54.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 54.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 53.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 52.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 51.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 51.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 50.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 50.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 48.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 47.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 47.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 47.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 47.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 46.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 46.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 46.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 46.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 46.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 45.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 45.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 44.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 44.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 44.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 44.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 44.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 43.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 42.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 42.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 42.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 41.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 40.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 39.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 39.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 39.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 39.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 39.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 39.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 38.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 38.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 38.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 37.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 36.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 36.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 36.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 36.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 36.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 36.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 35.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 35.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 35.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 34.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 34.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 33.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 33.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 33.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 32.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 32.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 31.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 31.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 31.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 30.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 30.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 30.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 30.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 30.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 29.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 28.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 27.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 27.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 27.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 27.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 26.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 26.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 24.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 23.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 21.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 16.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 13.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.7
FF:10151-102I7 76 years, female 15.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org