HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:75.2 nTPM
HPA Brain:7.9 nTPM
GTEx:75.2 nTPM
FANTOM5:37.2 Scaled Tags Per Million
Pig:104.6 nTPM
Mouse:84.2 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA073355
Glial cells High
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 7.9
Sample id Sample description nTPM
Hippocampus
nTPM: 5.1
1898 Male, age 80, left hemisphere 6.2
2529 Female, age 94, left hemisphere 5.4
2148 Female, age 91, left hemisphere 5.0
1911 Female, age 85, right hemisphere 4.7
2621 Female, age 67, right hemisphere 4.6
1855 Male, age 76, left hemisphere 4.5
Dentate gyrus
nTPM: 6.3
2531 Female, age 67, both hemispheres 12.6
2530 Female, age 94, left hemisphere 6.1
1927 Female, age 91, both hemispheres 5.0
2528 Male, age 74, both hemispheres 4.8
2246 Female, age 85, both hemispheres 4.7
2010 Male, age 76, both hemispheres 4.5
Entorhinal gyrus
nTPM: 7.9
1787 Male, age 76, left hemisphere 18.2
2613 Female, age 94, left hemisphere 8.4
2764 Male, age 80, right hemisphere 6.4
2117 Female, age 91, right hemisphere 5.0
1938 Female, age 85, left hemisphere 4.7
2686 Male, age 75, right hemisphere 4.7
Hippocampus, CA1
nTPM: 5.5
2749 Male, age 80, left hemisphere 8.4
2082 Female, age 91, right hemisphere 5.0
2527 Male, age 74, both hemispheres 4.8
1873 Female, age 85, both hemispheres 4.7
2045 Male, age 76, both hemispheres 4.5
Hippocampus, CA2
nTPM: 5.3
1963 Male, age 80, left hemisphere 6.4
2437 Female, age 94, left hemisphere 6.2
2113 Female, age 91, right hemisphere 5.0
2249 Male, age 74, both hemispheres 4.8
1940 Female, age 85, left hemisphere 4.7
1892 Male, age 76, both hemispheres 4.5
Hippocampus, CA3
nTPM: 5.2
2137 Male, age 80, left hemisphere 7.0
2620 Female, age 94, left hemisphere 5.3
2436 Male, age 74, both hemispheres 4.8
1891 Female, age 85, both hemispheres 4.7
2861 Female, age 67, both hemispheres 4.6
1867 Male, age 76, both hemispheres 4.5
Parahippocampal cortex
nTPM: 6.3
2250 Female, age 67, right hemisphere 16.4
2532 Female, age 72, left hemisphere 6.3
1850 Male, age 80, both hemispheres 6.0
2693 Female, age 94, both hemispheres 5.9
1990 Female, age 91, right hemisphere 5.0
2245 Female, age 91, both hemispheres 5.0
2692 Male, age 74, both hemispheres 4.8
1933 Female, age 85, both hemispheres 4.7
2622 Female, age 67, right hemisphere 4.6
2018 Male, age 76, both hemispheres 4.5
Perirhinal gyrus
nTPM: 5.5
1841 Female, age 85, right hemisphere 7.7
2521 Female, age 94, right hemisphere 5.3
1847 Female, age 91, left hemisphere 5.0
1794 Male, age 80, right hemisphere 4.8
2848 Male, age 76, right hemisphere 4.5
Subiculum
nTPM: 5.5
2438 Female, age 94, left hemisphere 8.1
1901 Male, age 80, both hemispheres 5.9
2729 Female, age 91, right hemisphere 5.0
2619 Male, age 74, both hemispheres 4.8
1977 Female, age 85, both hemispheres 4.7
2042 Male, age 76, both hemispheres 4.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 75.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 75.2
Samples: 197

Max nTPM: 120.3
Min nTPM: 34.0
Std nTPM: 15.9
Median nTPM: 72.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 120.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 118.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 112.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 112.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 109.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 108.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 106.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 105.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 105.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 105.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 104.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.2
FF:10169-103B7 60 years, female 37.3
FF:10153-102I9 76 years, female 37.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 104.6
Pig sample Sample description nTPM
Subiculum
nTPM: 94.3
Samples: 4

Max nTPM: 117.7
Min nTPM: 79.6
Sample A Female 117.7
Sample B Female 79.6
Sample C Male 98.8
Sample D Male 81.2
Dorsal hippocampus
nTPM: 101.3
Samples: 4

Max nTPM: 125.0
Min nTPM: 80.8
Sample A Female 125.0
Sample B Female 102.6
Sample C Male 96.6
Sample D Male 80.8
Entorhinal cortex
nTPM: 90.2
Samples: 4

Max nTPM: 100.6
Min nTPM: 74.1
Sample A Female 98.9
Sample B Female 74.1
Sample C Male 100.6
Sample D Male 87.2
Ventral hippocampus
nTPM: 104.6
Samples: 4

Max nTPM: 141.0
Min nTPM: 65.7
Sample A Female 99.9
Sample B Female 65.7
Sample C Male 141.0
Sample D Male 111.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 84.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 82.9
Samples: 4

Max nTPM: 99.4
Min nTPM: 76.4
Sample A Male 77.1
Sample B Male 76.4
Sample C Female 78.7
Sample D Female 99.4
Hippocampal formation
nTPM: 84.2
Samples: 4

Max nTPM: 91.2
Min nTPM: 75.7
Sample A Male 75.7
Sample B Male 81.8
Sample C Female 91.2
Sample D Female 88.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
68269682 Antisense, RP_041129_02_A08, Mouse strain C57BL/6J (56 days, male) 2.8

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