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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:560.2 nTPM
HPA Brain:1.6 nTPM
GTEx:560.2 nTPM
FANTOM5:935.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1.6
2194 Female, age 79, both hemispheres 3.0
1981 Female, age 72, midline 1.8
2048 Male, age 55, midline 1.4
2565 Male, age 75, midline 1.0
2816 Male, age 47, midline 0.7
Cervical spinal cord, dorsal horn
nTPM: 1.0
2296 Male, age 66, both hemispheres 1.5
1877 Male, age 55, unknown 1.4
2297 Male, age 75, both hemispheres 1.0
2069 Male, age 47, both hemispheres 0.8
2721 Male, age 90, both hemispheres 0.8
2173 Female, age 72, unknown 0.5
Cervical spinal cord, ventral horn
nTPM: 1.0
2295 Male, age 66, both hemispheres 2.6
2068 Male, age 55, unknown 1.4
2480 Male, age 75, both hemispheres 1.0
2809 Male, age 90, both hemispheres 0.8
2098 Female, age 72, unknown 0.1
2820 Female, age 79, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

560.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 560.2
Samples: 159

Max nTPM: 7668.7
Min nTPM: 13.9
Std nTPM: 810.6
Median nTPM: 335.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7668.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 4036.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2772.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2503.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 2327.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2175.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2163.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2075.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1858.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1845.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1643.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1527.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1265.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1259.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1252.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1122.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1095.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1080.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1045.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1013.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 983.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 952.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 947.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 938.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 936.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 931.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 907.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 795.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 783.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 780.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 769.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 768.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 756.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 726.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 700.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 684.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 675.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 653.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 646.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 585.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 582.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 562.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 561.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 550.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 534.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 502.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 494.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 494.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 478.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 477.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 474.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 472.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 462.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 462.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 456.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 455.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 453.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 440.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 435.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 432.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 426.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 410.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 410.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 408.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 405.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 400.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 397.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 397.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 387.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 386.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 385.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 381.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 373.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 373.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 367.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 353.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 342.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 342.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 339.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 335.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 332.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 317.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 314.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 313.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 309.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 309.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 307.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 305.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 304.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 297.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 283.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 281.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 272.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 264.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 264.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 261.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 260.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 259.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 255.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 251.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 239.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 239.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 232.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 227.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 226.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 225.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 223.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 221.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 217.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 212.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 207.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 207.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 197.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 196.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 194.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 191.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 190.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 187.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 182.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 181.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 178.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 172.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 168.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 167.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 166.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 165.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 165.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 162.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 157.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 144.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 140.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 139.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 136.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 128.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 118.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 115.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 104.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 104.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 99.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 96.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 96.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 93.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 91.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 80.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 77.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 75.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 66.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 49.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 48.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 43.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 42.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 25.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 23.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 22.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 20.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 13.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

935.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 935.7
FF:10159-103A6 76 years, female 1156.0
FF:10181-103D1 60 years, female 715.4

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