We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HSPA1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • HSPA1A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:863.0 nTPM
HPA Brain:1.6 nTPM
GTEx:863.0 nTPM
FANTOM5:1290.1 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 0.9
2048 Male, age 55, midline 1.4
1981 Female, age 72, midline 1.0
2194 Female, age 79, both hemispheres 1.0
2816 Male, age 47, midline 1.0
2565 Male, age 75, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 1.6
2069 Male, age 47, both hemispheres 3.0
2296 Male, age 66, both hemispheres 2.3
1877 Male, age 55, unknown 2.0
2173 Female, age 72, unknown 1.0
2721 Male, age 90, both hemispheres 1.0
2297 Male, age 75, both hemispheres 0.5
Cervical spinal cord, ventral horn
nTPM: 0.9
2068 Male, age 55, unknown 1.1
2098 Female, age 72, unknown 1.0
2809 Male, age 90, both hemispheres 1.0
2820 Female, age 79, both hemispheres 1.0
2480 Male, age 75, both hemispheres 0.7
2295 Male, age 66, both hemispheres 0.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

863.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 863.0
Samples: 159

Max nTPM: 12155.1
Min nTPM: 37.1
Std nTPM: 1359.1
Median nTPM: 437.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 12155.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 6717.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 6088.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4618.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3981.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 3630.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3246.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3214.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3000.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2940.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2591.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2338.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2235.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2120.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2114.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1886.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1868.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1847.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1803.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1789.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1750.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1716.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1709.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1505.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1398.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1308.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1280.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1274.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1199.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1044.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1029.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1026.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 960.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 923.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 917.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 895.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 888.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 877.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 875.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 874.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 846.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 840.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 837.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 825.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 818.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 815.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 798.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 779.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 732.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 704.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 700.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 677.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 665.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 657.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 633.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 630.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 627.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 597.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 595.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 585.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 578.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 550.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 545.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 544.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 529.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 527.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 500.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 496.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 491.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 468.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 465.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 461.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 460.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 455.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 455.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 452.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 444.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 441.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 441.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 437.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 433.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 417.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 415.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 414.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 408.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 404.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 404.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 395.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 390.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 389.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 388.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 367.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 359.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 359.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 356.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 343.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 339.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 337.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 335.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 329.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 328.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 323.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 320.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 318.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 316.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 306.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 305.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 302.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 296.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 291.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 282.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 281.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 281.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 277.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 272.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 267.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 266.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 263.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 263.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 260.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 257.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 252.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 252.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 247.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 239.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 238.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 224.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 224.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 223.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 198.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 197.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 194.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 193.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 191.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 187.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 170.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 168.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 164.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 161.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 139.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 135.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 131.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 130.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 129.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 123.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 122.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 115.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 115.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 108.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 103.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 93.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 82.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 80.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 63.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 53.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 49.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 47.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 37.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1290.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1290.1
FF:10159-103A6 76 years, female 1701.1
FF:10181-103D1 60 years, female 879.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org