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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:182.1 nTPM
HPA Brain:4.2 nTPM
GTEx:182.1 nTPM
FANTOM5:100.2 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2.8
1981 Female, age 72, midline 4.3
2565 Male, age 75, midline 3.9
2816 Male, age 47, midline 2.8
2048 Male, age 55, midline 2.3
2194 Female, age 79, both hemispheres 0.5
Cervical spinal cord, dorsal horn
nTPM: 4.2
2297 Male, age 75, both hemispheres 7.5
2721 Male, age 90, both hemispheres 5.5
2069 Male, age 47, both hemispheres 3.5
2173 Female, age 72, unknown 3.3
2296 Male, age 66, both hemispheres 3.2
1877 Male, age 55, unknown 2.3
Cervical spinal cord, ventral horn
nTPM: 3.9
2098 Female, age 72, unknown 7.2
2809 Male, age 90, both hemispheres 6.5
2295 Male, age 66, both hemispheres 3.4
2480 Male, age 75, both hemispheres 2.8
2068 Male, age 55, unknown 2.7
2820 Female, age 79, both hemispheres 0.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 182.1
Samples: 159

Max nTPM: 561.6
Min nTPM: 46.7
Std nTPM: 90.8
Median nTPM: 162.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 561.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 457.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 443.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 431.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 430.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 419.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 399.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 365.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 343.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 329.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 329.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 328.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 323.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 314.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 312.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 311.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 310.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 308.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 304.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 301.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 284.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 279.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 272.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 270.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 269.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 263.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 260.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 259.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 259.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 239.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 237.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 236.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 235.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 232.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 231.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 223.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 223.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 223.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 222.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 219.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 219.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 216.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 213.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 213.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 211.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 210.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 209.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 207.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 204.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 202.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 202.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 200.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 199.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 199.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 197.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 195.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 192.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 192.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 190.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 186.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 186.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 185.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 184.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 183.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 182.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 177.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 177.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 177.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 175.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 174.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 173.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 171.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 166.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 165.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 165.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 163.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 162.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 162.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 162.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 160.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 160.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 158.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 157.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 157.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 157.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 156.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 156.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 156.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 153.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 150.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 150.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 148.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 148.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 147.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 147.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 146.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 146.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 145.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 145.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 140.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 139.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 136.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 136.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 133.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 132.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 132.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 127.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 126.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 125.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 124.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 123.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 121.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 120.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 120.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 119.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 117.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 113.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 112.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 111.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 109.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 108.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 107.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 106.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 105.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 105.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 104.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 104.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 103.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 99.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 99.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 97.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 96.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 95.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 93.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 92.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 91.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 90.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 89.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 86.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 83.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 80.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 80.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 79.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 77.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 76.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 75.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 66.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 64.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 59.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 58.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 53.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 52.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 46.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

100.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 100.2
FF:10159-103A6 76 years, female 157.0
FF:10181-103D1 60 years, female 43.3

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