BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.5 nTPM
HPA Brain:3.0 nTPM
GTEx:10.5 nTPM
FANTOM5:5.7 Scaled Tags Per Million
Pig:2.1 nTPM
Mouse:1.2 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 3.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.4
2289 Male, age 61, right hemisphere 3.4
2290 Female, age 72, unknown 3.3
2846 Female, age 79, unknown 3.3
1857 Female, age 85, left hemisphere 2.3
1781 Male, age 74, unknown 2.1
1854 Male, age 80, left hemisphere 1.9
2481 Female, age 94, left hemisphere 1.9
2288 Male, age 75, left hemisphere 1.2
Globus pallidus, externus
nTPM: 2.8
2646 Male, age 61, right hemisphere 4.7
2567 Female, age 72, unknown 3.0
1996 Male, age 80, right hemisphere 2.6
2772 Female, age 79, unknown 2.1
2395 Male, age 75, both hemispheres 1.8
Globus pallidus, internus
nTPM: 2.6
2778 Female, age 91, both hemispheres 3.2
2566 Female, age 72, unknown 3.1
2483 Female, age 94, right hemisphere 3.0
1818 Male, age 74, unknown 2.5
2111 Female, age 85, right hemisphere 2.2
2287 Male, age 75, right hemisphere 2.1
2037 Male, age 80, right hemisphere 1.9
Nucleus accumbens
nTPM: 2.4
1783 Male, age 74, unknown 3.2
2732 Male, age 80, right hemisphere 3.0
1806 Female, age 85, left hemisphere 2.6
1856 Female, age 91, right hemisphere 2.5
2698 Female, age 72, unknown 2.5
2824 Male, age 61, right hemisphere 2.5
2286 Male, age 75, left hemisphere 1.6
2391 Female, age 94, left hemisphere 1.6
Nucleus basalis of Meynert
nTPM: 2.9
2569 Male, age 61, both hemispheres 4.1
2821 Male, age 75, both hemispheres 2.8
2393 Male, age 80, right hemisphere 2.5
2484 Female, age 94, left hemisphere 2.3
Nucleus of the diagonal band
nTPM: 2.7
1812 Female, age 91, both hemispheres 3.3
2775 Male, age 80, right hemisphere 3.1
2195 Female, age 85, both hemispheres 3.0
2029 Male, age 61, right hemisphere 2.2
1979 Male, age 74, unknown 2.1
Putamen
nTPM: 2.4
1838 Male, age 80, right hemisphere 3.0
1829 Male, age 74, unknown 2.9
2489 Female, age 72, unknown 2.8
2466 Female, age 79, unknown 2.5
2647 Male, age 75, left hemisphere 2.5
2482 Female, age 94, left hemisphere 1.9
1937 Female, age 91, right hemisphere 1.4
Septal nuclei
nTPM: 2.6
2394 Male, age 61, left hemisphere 3.0
1960 Male, age 74, unknown 2.9
2009 Female, age 91, both hemispheres 2.9
2629 Female, age 94, right hemisphere 2.8
2199 Male, age 80, right hemisphere 2.6
2031 Female, age 72, unknown 2.2
2059 Female, age 85, both hemispheres 1.7
Stria terminalis, bed nucleus
nTPM: 3.0
1974 Female, age 91, both hemispheres 3.6
2201 Male, age 74, unknown 3.2
2486 Female, age 94, both hemispheres 2.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 10.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 18.4
Min nTPM: 5.1
Std nTPM: 2.3
Median nTPM: 9.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 18.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 17.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 17.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 16.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 16.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 16.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 16.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 16.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 16.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 15.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 14.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.5
Samples: 246

Max nTPM: 18.5
Min nTPM: 5.2
Std nTPM: 2.3
Median nTPM: 10.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 18.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 17.4
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 16.8
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 16.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 16.6
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 16.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 15.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 15.7
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 15.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 15.4
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 15.4
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Brain - Putamen (basal ganglia)
Average nTPM: 9.4
Samples: 205

Max nTPM: 16.8
Min nTPM: 5.0
Std nTPM: 2.0
Median nTPM: 9.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 16.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 15.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 15.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 14.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 14.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 13.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 13.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 13.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 13.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 12.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 12.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.7
FF:10164-103B2 76 years, female 5.7
Nucleus accumbens
Scaled Tags Per Million: 2.3
FF:10037-101F1 23-56 years, mixed 2.3
Putamen
Scaled Tags Per Million: 5.0
FF:10176-103C5 60 years, female 5.0
Globus pallidus
Scaled Tags Per Million: 1.7
FF:10161-103A8 76 years, female 2.6
FF:10175-103C4 60 years, female 0.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 2.1
Pig sample Sample description nTPM
Caudate
nTPM: 2.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.9
Sample A Female 2.2
Sample B Female 2.3
Sample C Male 2.1
Sample D Male 1.9
Putamen
nTPM: 1.7
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.3
Sample A Female 2.2
Sample B Female 1.3
Sample C Male 1.5
Sample D Male 1.7
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.7
Sample A Female 2.2
Sample B Female 1.7
Sample C Male 1.7
Sample D Male 1.8
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.4
Sample A Female 1.6
Sample B Female 1.4
Sample C Male 2.4
Sample D Male 1.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.9
Sample A Male 1.3
Sample B Male 1.5
Sample C Female 1.2
Sample D Female 0.9
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 0.5
Sample C Female 0.6
Sample D Female 0.7
Ventral forebrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.7
Sample A Male 1.6
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 1.1

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
67787336 Antisense, RP_040916_02_H01, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.2
67787336 Antisense, RP_040916_02_H01, Mouse strain C57BL/6J (56 days, male) 0.2

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