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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:166.6 nTPM
HPA Brain:133.7 nTPM
GTEx:166.6 nTPM
FANTOM5:272.5 Scaled Tags Per Million
Pig:174.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 133.7
2565 Male, age 75, midline 159.3
2816 Male, age 47, midline 143.5
1981 Female, age 72, midline 129.2
2048 Male, age 55, midline 122.6
2194 Female, age 79, both hemispheres 113.6
Cervical spinal cord, dorsal horn
nTPM: 118.7
2173 Female, age 72, unknown 178.7
2296 Male, age 66, both hemispheres 147.6
2721 Male, age 90, both hemispheres 111.7
1877 Male, age 55, unknown 109.6
2069 Male, age 47, both hemispheres 91.6
2297 Male, age 75, both hemispheres 73.2
Cervical spinal cord, ventral horn
nTPM: 124.0
2098 Female, age 72, unknown 162.1
2809 Male, age 90, both hemispheres 142.4
2820 Female, age 79, both hemispheres 121.7
2068 Male, age 55, unknown 115.6
2295 Male, age 66, both hemispheres 101.2
2480 Male, age 75, both hemispheres 101.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 166.6
Samples: 159

Max nTPM: 307.1
Min nTPM: 60.2
Std nTPM: 47.8
Median nTPM: 167.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 307.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 296.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 285.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 274.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 259.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 258.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 253.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 253.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 245.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 243.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 241.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 240.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 240.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 232.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 226.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 219.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 219.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 219.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 218.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 217.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 217.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 215.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 215.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 215.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 211.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 211.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 209.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 209.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 209.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 208.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 208.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 205.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 204.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 203.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 202.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 202.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 202.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 202.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 200.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 199.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 199.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 197.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 196.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 196.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 194.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 194.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 194.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 192.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 190.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 188.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 188.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 188.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 187.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 186.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 186.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 186.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 185.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 185.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 184.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 184.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 184.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 183.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 181.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 181.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 180.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 180.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 179.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 178.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 176.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 173.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 172.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 171.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 171.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 170.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 170.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 170.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 170.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 169.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 167.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 166.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 166.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 164.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 163.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 160.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 160.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 160.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 158.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 157.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 155.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 155.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 155.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 153.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 150.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 150.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 150.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 150.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 148.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 148.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 147.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 145.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 144.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 143.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 143.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 142.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 140.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 140.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 140.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 140.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 139.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 138.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 138.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 136.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 136.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 135.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 135.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 135.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 129.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 128.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 127.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 127.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 126.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 124.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 122.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 122.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 120.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 120.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 120.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 119.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 118.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 117.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 116.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 116.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 115.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 113.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 112.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 111.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 110.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 109.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 108.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 106.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 105.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 103.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 102.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 101.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 101.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 95.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 94.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 92.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 90.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 89.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 84.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 76.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 71.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 60.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

272.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 272.5
FF:10181-103D1 60 years, female 338.4
FF:10159-103A6 76 years, female 206.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 142.5
Samples: 4

Max nTPM: 144.3
Min nTPM: 140.7
Sample A Female 141.4
Sample B Female 140.7
Sample C Male 143.4
Sample D Male 144.3
Ventral spinal cord
nTPM: 174.9
Samples: 4

Max nTPM: 177.0
Min nTPM: 169.1
Sample A Female 176.8
Sample B Female 169.1
Sample C Male 176.8
Sample D Male 177.0

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