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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RACK1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
936.6
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
3150.3
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
3075.3
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
2645.0
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
2474.1
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
2449.9
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
2435.9
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
2398.5
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
2365.6
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
2363.8
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
2240.8
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
2171.5
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
2134.0
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
2058.4
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
2050.6
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
2045.9
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
2043.3
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
2037.1
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
2028.2
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
1957.2
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
1954.1
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
1933.2
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
1905.5
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
1899.7
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
1867.8
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
1819.2
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
1811.5
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
1802.6
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
1775.5
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
1744.3
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
1735.8
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
1729.2
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
1700.1
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
1680.8
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
1633.5
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
1623.8
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
1593.7
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
1589.3
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
1570.5
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
1509.9
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
1497.6
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
1477.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
1474.9
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
1460.4
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
1458.2
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
1455.0
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
1427.8
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
1419.4
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
1397.0
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
1394.0
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
1373.3
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
1369.7
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
1365.6
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
1355.2
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
1334.6
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
1328.3
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
1321.8
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
1312.4
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
1296.5
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
1282.6
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
1281.1
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
1280.9
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
1279.7
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
1274.5
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
1272.9
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
1272.0
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
1271.1
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
1261.3
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
1244.7
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
1243.0
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
1239.2
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
1239.0
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
1238.9
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
1230.3
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
1226.7
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
1224.9
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
1224.8
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
1217.0
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
1215.1
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
1196.9
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
1186.2
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
1184.6
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
1181.5
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
1181.3
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
1179.8
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
1176.5
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
1170.3
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
1166.1
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
1162.8
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
1153.9
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
1152.1
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
1147.6
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
1147.4
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
1144.8
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
1140.5
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
1139.7
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
1135.6
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
1109.9
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
1108.9
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
1100.2
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
1082.8
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
1074.9
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
1069.7
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
1068.5
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
1067.9
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
1060.7
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
1045.2
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
1035.1
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
1031.5
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
1026.9
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
1024.2
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
1021.7
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
1020.8
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
1016.4
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
1003.2
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
985.0
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
980.1
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
977.4
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
973.1
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
972.9
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
969.9
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
967.0
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
963.7
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
962.9
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
960.4
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
959.6
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
954.3
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
943.6
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
939.7
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
939.0
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
937.3
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
937.1
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
936.1
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
931.5
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
929.0
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
922.0
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
921.1
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
918.7
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
914.1
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
913.4
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
912.3
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
906.5
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
902.4
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
900.0
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
894.9
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
886.9
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
883.3
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
878.4
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
878.3
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
876.6
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
871.8
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
869.2
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
866.3
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
861.8
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
860.2
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
855.6
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
852.5
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
849.9
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
849.0
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
847.8
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
847.7
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
846.6
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
840.6
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
839.0
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
839.0
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
834.8
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
829.4
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
828.9
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
826.8
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
825.1
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
824.7
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
820.1
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
815.9
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
815.5
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
815.3
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
810.6
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
806.6
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
806.5
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
803.6
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
801.4
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
798.5
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
795.9
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
795.4
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
793.2
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
792.3
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
791.8
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
790.3
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
788.2
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
783.6
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
782.3
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
781.7
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
780.9
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
780.7
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
779.3
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
777.7
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
776.4
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
776.2
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
775.3
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
773.8
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
771.8
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
771.0
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
769.9
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
769.6
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
769.2
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
768.8
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
768.8
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
765.2
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
765.0
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
763.8
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
760.9
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
757.6
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
757.3
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
753.5
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
752.4
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
750.8
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
745.1
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
744.9
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
744.6
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
743.1
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
742.6
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
739.8
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
736.6
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
734.4
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
733.3
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
731.2
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
730.6
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
726.2
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
725.5
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
725.1
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
724.2
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
720.0
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
719.7
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
719.1
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
717.5
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
715.9
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
715.8
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
715.1
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
711.7
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
708.9
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
706.0
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
705.8
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
698.1
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
696.8
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
696.8
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
688.9
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
685.5
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
681.9
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
678.9
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
678.4
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
676.8
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
674.3
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
669.8
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
664.5
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
662.5
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
656.7
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
655.6
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
654.8
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
654.7
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
654.4
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
650.5
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
650.2
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
647.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
639.1
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
635.4
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
635.2
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
631.4
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
627.6
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
627.6
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
627.4
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
619.1
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
617.8
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
614.5
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
613.4
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
613.1
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
609.2
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
608.9
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
608.8
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
608.2
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
607.6
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
607.6
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
606.6
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
602.6
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
601.8
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
595.3
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
592.6
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
588.5
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
586.1
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
582.3
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
580.9
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
578.5
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
578.4
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
572.4
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
570.6
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
569.7
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
566.4
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
565.0
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
557.8
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
555.3
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
552.7
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
551.7
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
550.8
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
549.2
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
548.2
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
542.1
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
540.2
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
538.3
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
536.9
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
532.6
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
530.7
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
530.5
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
528.3
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
527.8
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
525.2
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
519.7
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
519.5
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
517.9
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
514.5
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
512.5
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
510.6
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
505.9
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
503.4
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
503.3
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
495.8
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
486.2
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
485.4
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
475.9
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
475.1
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
466.2
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
463.1
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
462.8
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
459.9
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
458.0
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
455.5
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
442.2
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
439.0
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
437.7
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
430.9
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
428.7
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
422.5
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
411.7
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
407.6
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
402.7
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
400.8
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
400.0
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
399.1
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
396.6
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
385.6
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
383.6
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
373.4
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
371.2
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
368.7
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
361.3
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
355.6
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
355.2
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
354.4
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
351.0
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
351.0
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
349.3
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
344.7
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
343.5
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
343.1
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
306.2
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
0.4
1021
Tumor
0.4
567
Tumor
0.4
285
Tumor
0.4
537
Tumor
0.3
223
Tumor
0.3
815
Tumor
0.3
327
Tumor
0.3
367
Tumor
0.3
743
Tumor
0.3
983
Tumor
0.3
851
Tumor
0.3
1027
Tumor
0.3
965
Tumor
0.3
523
Tumor
0.2
331
Tumor
0.2
727
Tumor
0.2
1025
Tumor
0.2
393
Tumor
0.2
865
Tumor
0.2
937
Tumor
0.2
967
Tumor
0.2
713
Tumor
0.2
395
Tumor
0.2
131
Tumor
0.2
267
Tumor
0.2
385
Tumor
0.1
685
Tumor
0.1
661
Tumor
0.1
745
Tumor
0.1
443
Tumor
0.1
981
Tumor
0.1
227
Tumor
0.1
737
Tumor
0.1
636
Normal
0.1
135
Tumor
0.1
387
Tumor
0.1
877
Tumor
0.1
738
Normal
0.1
517
Tumor
0.1
746
Normal
0.1
411
Tumor
0.1
755
Tumor
0.1
955
Tumor
0.1
715
Tumor
0.1
952
Normal
0.1
515
Tumor
0.1
1016
Normal
0.1
445
Tumor
0.1
1026
Normal
0.1
966
Normal
0.1
1015
Tumor
0.1
777
Tumor
0.1
412
Normal
0.1
953
Tumor
0.1
545
Tumor
0.0
697
Tumor
0.0
778
Normal
0.0
957
Tumor
0.0
113
Tumor
0.0
1043
Tumor
0.0
186
Normal
0.0
823
Tumor
0.0
635
Tumor
0.0
861
Tumor
0.0
363
Tumor
0.0
355
Tumor
0.0
257
Tumor
0.0
728
Normal
0.0
878
Normal
0.0
172
Normal
0.0
497
Tumor
0.0
527
Tumor
0.0
913
Tumor
0.0
124
Normal
0.0
211
Tumor
0.0
724
Normal
0.0
817
Tumor
0.0
452
Normal
0.0
554
Normal
0.0
343
Tumor
0.0
914
Normal
0.0
461
Tumor
0.0
1028
Normal
0.0
923
Tumor
0.0
277
Tumor
0.0
533
Tumor
0.0
968
Normal
0.0
744
Normal
0.0
171
Tumor
0.0
474
Normal
0.0
951
Tumor
0.0
525
Tumor
0.0
813
Tumor
0.0
1031
Tumor
0.0
125
Tumor
0.0
147
Tumor
0.0
271
Tumor
0.0
436
Normal
0.0
471
Tumor
0.0
535
Tumor
0.0
228
Normal
0.0
568
Normal
0.0
816
Normal
0.0
413
Tumor
0.0
448
Normal
0.0
463
Tumor
0.0
742
Normal
0.0
286
Normal
0.0
648
Normal
0.0
137
Tumor
0.0
434
Normal
0.0
342
Normal
0.0
662
Normal
0.0
546
Normal
0.0
313
Tumor
0.0
975
Tumor
0.0
883
Tumor
0.0
698
Normal
0.0
351
Tumor
0.0
375
Tumor
0.0
451
Tumor
0.0
283
Tumor
0.0
518
Normal
0.0
982
Normal
0.0
938
Normal
0.0
114
Normal
0.0
493
Tumor
0.0
721
Tumor
0.0
671
Tumor
0.0
956
Normal
0.0
162
Normal
0.0
921
Tumor
0.0
214
Normal
0.0
212
Normal
-0.1
392
Normal
-0.1
664
Normal
-0.1
447
Tumor
-0.1
368
Normal
-0.1
943
Tumor
-0.1
261
Tumor
-0.1
573
Tumor
-0.1
785
Tumor
-0.1
696
Normal
-0.1
278
Normal
-0.1
222
Normal
-0.1
344
Normal
-0.1
477
Tumor
-0.1
534
Normal
-0.1
112
Tumor
-0.1
314
Normal
-0.1
924
Normal
-0.1
231
Tumor
-0.1
357
Tumor
-0.1
427
Tumor
-0.1
138
Normal
-0.1
218
Normal
-0.1
213
Tumor
-0.1
425
Tumor
-0.1
881
Tumor
-0.1
663
Tumor
-0.1
617
Tumor
-0.1
446
Normal
-0.1
686
Normal
-0.1
867
Tumor
-0.1
695
Tumor
-0.1
487
Tumor
-0.1
132
Normal
-0.1
873
Tumor
-0.1
964
Normal
-0.1
977
Tumor
-0.1
1014
Normal
-0.1
432
Normal
-0.1
917
Tumor
-0.1
665
Tumor
-0.1
925
Tumor
-0.1
462
Normal
-0.1
984
Normal
-0.1
136
Normal
-0.1
356
Normal
-0.1
723
Tumor
-0.1
217
Tumor
-0.1
628
Normal
-0.1
366
Normal
-0.1
976
Normal
-0.1
618
Normal
-0.1
353
Tumor
-0.1
142
Normal
-0.1
388
Normal
-0.1
1022
Normal
-0.1
332
Normal
-0.1
391
Tumor
-0.1
642
Normal
-0.1
128
Normal
-0.1
538
Normal
-0.1
433
Tumor
-0.1
358
Normal
-0.1
185
Tumor
-0.1
386
Normal
-0.1
963
Tumor
-0.1
786
Normal
-0.1
862
Normal
-0.1
111
Normal
-0.1
571
Tumor
-0.1
394
Normal
-0.1
258
Normal
-0.1
814
Normal
-0.1
423
Tumor
-0.1
465
Tumor
-0.1
722
Normal
-0.1
431
Tumor
-0.1
187
Tumor
-0.1
874
Normal
-0.1
284
Normal
-0.1
196
Normal
-0.1
915
Tumor
-0.1
756
Normal
-0.1
161
Tumor
-0.1
148
Normal
-0.1
421
Tumor
-0.1
647
Tumor
-0.1
455
Tumor
-0.1
145
Tumor
-0.1
195
Tumor
-0.1
574
Normal
-0.1
1041
Tumor
-0.1
918
Normal
-0.1
141
Tumor
-0.1
467
Tumor
-0.1
864
Normal
-0.1
312
Normal
-0.1
526
Normal
-0.1
491
Tumor
-0.2
572
Normal
-0.2
396
Normal
-0.2
473
Tumor
-0.2
123
Tumor
-0.2
416
Normal
-0.2
188
Normal
-0.2
616
Normal
-0.2
516
Normal
-0.2
481
Tumor
-0.2
268
Normal
-0.2
272
Normal
-0.2
376
Normal
-0.2
714
Normal
-0.2
911
Tumor
-0.2
492
Normal
-0.2
422
Normal
-0.2
262
Normal
-0.2
472
Normal
-0.2
916
Normal
-0.2
553
Tumor
-0.2
1044
Normal
-0.2
857
Tumor
-0.2
365
Tumor
-0.2
528
Normal
-0.2
435
Tumor
-0.2
1032
Normal
-0.2
536
Normal
-0.2
1013
Tumor
-0.2
298
Normal
-0.2
232
Normal
-0.2
328
Normal
-0.2
944
Normal
-0.2
466
Normal
-0.2
221
Tumor
-0.2
1042
Normal
-0.2
926
Normal
-0.2
958
Normal
-0.2
666
Normal
-0.2
716
Normal
-0.2
978
Normal
-0.2
484
Normal
-0.2
126
Normal
-0.2
615
Tumor
-0.2
464
Normal
-0.2
191
Tumor
-0.2
564
Normal
-0.2
741
Tumor
-0.2
1046
Normal
-0.2
426
Normal
-0.2
362
Normal
-0.2
866
Normal
-0.2
494
Normal
-0.2
482
Normal
-0.2
361
Tumor
-0.2
224
Normal
-0.2
524
Normal
-0.2
483
Tumor
-0.2
922
Normal
-0.2
852
Normal
-0.2
513
Tumor
-0.2
868
Normal
-0.2
341
Tumor
-0.2
882
Normal
-0.2
297
Tumor
-0.2
488
Normal
-0.3
858
Normal
-0.3
424
Normal
-0.3
146
Normal
-0.3
311
Tumor
-0.3
352
Normal
-0.3
414
Normal
-0.3
428
Normal
-0.3
444
Normal
-0.3
824
Normal
-0.3
558
Normal
-0.3
954
Normal
-0.3
468
Normal
-0.3
364
Normal
-0.3
627
Tumor
-0.3
456
Normal
-0.3
478
Normal
-0.3
641
Tumor
-0.3
383
Tumor
-0.3
354
Normal
-0.3
498
Normal
-0.4
415
Tumor
-0.4
384
Normal
-0.4
912
Normal
-0.4
563
Tumor
-0.4
672
Normal
-0.4
514
Normal
-0.4
127
Tumor
-0.4
192
Normal
-0.4
1045
Tumor
-0.4
884
Normal
-0.4
863
Tumor
-0.5
818
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.