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RACK1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:232.7 nTPM
FANTOM5:553.8 Scaled Tags Per Million
Pig:143.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB004288
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 232.7
Samples: 246

Max nTPM: 531.6
Min nTPM: 134.7
Std nTPM: 54.0
Median nTPM: 226.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 531.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 507.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 418.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 364.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 363.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 350.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 345.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 344.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 343.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 336.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 333.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 328.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 324.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 322.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 318.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 315.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 315.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 311.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 311.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 307.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 301.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 300.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 300.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 295.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 294.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 293.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 291.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 290.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 289.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 286.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 285.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 284.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 284.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 284.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 284.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 283.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 282.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 280.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 279.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 278.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 278.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 277.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 277.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 276.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 275.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 273.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 271.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 271.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 270.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 270.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 269.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 268.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 267.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 267.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 266.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 265.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 263.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 262.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 262.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 261.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 257.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 257.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 257.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 257.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 256.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 256.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 255.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 255.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 255.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 254.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 254.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 252.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 252.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 250.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 248.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 248.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 247.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 247.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 246.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 246.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 246.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 246.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 246.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 245.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 245.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 245.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 244.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 243.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 242.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 242.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 240.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 239.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 239.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 238.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 238.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 237.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 237.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 236.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 236.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 236.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 236.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 235.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 235.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 235.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 235.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 235.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 234.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 234.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 233.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 233.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 231.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 231.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 231.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 230.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 230.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 229.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 229.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 228.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 228.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 228.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 228.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 227.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 226.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 226.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 225.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 224.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 224.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 224.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 223.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 223.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 222.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 221.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 220.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 220.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 219.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 218.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 217.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 217.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 217.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 216.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 216.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 216.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 215.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 215.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 214.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 213.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 213.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 213.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 213.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 213.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 213.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 212.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 212.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 211.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 211.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 210.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 210.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 210.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 210.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 210.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 208.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 208.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 205.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 204.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 204.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 204.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 204.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 204.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 202.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 202.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 202.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 202.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 202.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 202.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 201.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 201.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 199.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 199.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 198.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 197.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 197.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 197.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 194.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 194.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 194.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 193.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 192.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 192.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 191.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 191.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 190.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 189.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 189.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 188.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 188.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 187.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 187.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 187.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 187.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 187.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 186.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 186.5
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 186.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 186.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 186.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 183.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 183.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 182.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 182.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 182.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 181.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 180.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 178.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 177.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 177.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 177.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 176.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 176.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 175.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 175.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 175.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 172.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 172.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 172.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 171.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 171.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 170.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 168.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 167.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 166.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 166.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 165.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 163.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 163.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 162.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 162.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 162.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 161.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 161.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 160.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 160.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 159.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 157.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 151.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 140.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 134.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

553.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 553.8
FF:10164-103B2 76 years, female 553.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.2
Pig sample Sample description nTPM
Caudate
nTPM: 143.2
Samples: 4

Max nTPM: 163.5
Min nTPM: 118.1
Sample A Female 135.8
Sample B Female 155.4
Sample C Male 163.5
Sample D Male 118.1

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