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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:868.1 nTPM
GTEx:868.1 nTPM
FANTOM5:2086.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB004288
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

868.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 868.1
Samples: 156

Max nTPM: 1504.1
Min nTPM: 481.2
Std nTPM: 206.3
Median nTPM: 842.2
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1504.1
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1470.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1447.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1386.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1313.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1310.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1304.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1275.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1218.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1215.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1197.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1194.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1177.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1173.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1161.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1155.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1147.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1131.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1117.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1117.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1111.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1097.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1077.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1068.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1066.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1066.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1064.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1056.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1054.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1046.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1040.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1037.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1034.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1030.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1025.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1020.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1019.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1019.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1013.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1011.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1007.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 986.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 980.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 977.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 956.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 952.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 945.4
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 943.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 943.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 940.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 934.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 928.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 924.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 920.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 919.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 918.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 917.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 906.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 901.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 895.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 894.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 893.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 887.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 886.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 885.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 880.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 878.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 876.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 876.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 868.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 866.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 863.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 860.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 858.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 852.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 851.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 843.9
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 842.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 842.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 837.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 832.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 821.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 818.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 816.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 811.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 809.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 807.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 801.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 798.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 797.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 797.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 794.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 792.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 791.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 790.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 790.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 789.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 780.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 780.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 777.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 770.3
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 757.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 757.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 757.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 755.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 751.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 749.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 744.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 741.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 737.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 729.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 727.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 725.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 720.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 719.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 718.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 713.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 712.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 711.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 708.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 706.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 702.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 696.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 694.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 692.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 683.8
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 682.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 681.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 673.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 671.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 668.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 666.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 662.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 656.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 656.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 645.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 644.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 640.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 627.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 624.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 622.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 622.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 609.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 599.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 598.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 590.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 590.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 588.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 580.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 575.7
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 570.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 568.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 544.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 541.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 529.5
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 481.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2086.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 2086.9
FF:10204-103F6 68 years, female 2086.9

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