BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:228.8 nTPM
HPA Brain:81.7 nTPM
GTEx:228.8 nTPM
FANTOM5:351.7 Scaled Tags Per Million
Pig:458.3 nTPM
Mouse:492.4 nTPM
Allen mouse:20.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA050483
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 81.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 74.7
1857 Female, age 85, left hemisphere 111.0
2288 Male, age 75, left hemisphere 93.0
2290 Female, age 72, unknown 90.2
2289 Male, age 61, right hemisphere 67.2
2846 Female, age 79, unknown 65.1
1854 Male, age 80, left hemisphere 62.3
2481 Female, age 94, left hemisphere 57.8
1781 Male, age 74, unknown 51.2
Globus pallidus, externus
nTPM: 50.5
2646 Male, age 61, right hemisphere 59.7
2567 Female, age 72, unknown 56.7
2395 Male, age 75, both hemispheres 46.8
2772 Female, age 79, unknown 46.3
1996 Male, age 80, right hemisphere 43.1
Globus pallidus, internus
nTPM: 37.0
2287 Male, age 75, right hemisphere 66.8
2483 Female, age 94, right hemisphere 49.1
2566 Female, age 72, unknown 34.5
1818 Male, age 74, unknown 33.6
2037 Male, age 80, right hemisphere 27.2
2111 Female, age 85, right hemisphere 26.6
2778 Female, age 91, both hemispheres 21.3
Nucleus accumbens
nTPM: 67.5
1806 Female, age 85, left hemisphere 89.5
1783 Male, age 74, unknown 81.1
1856 Female, age 91, right hemisphere 69.7
2698 Female, age 72, unknown 69.2
2824 Male, age 61, right hemisphere 67.7
2286 Male, age 75, left hemisphere 67.6
2732 Male, age 80, right hemisphere 54.7
2391 Female, age 94, left hemisphere 40.5
Nucleus basalis of Meynert
nTPM: 60.1
2569 Male, age 61, both hemispheres 94.5
2393 Male, age 80, right hemisphere 61.7
2484 Female, age 94, left hemisphere 43.5
2821 Male, age 75, both hemispheres 40.8
Nucleus of the diagonal band
nTPM: 78.5
2195 Female, age 85, both hemispheres 124.8
1979 Male, age 74, unknown 75.2
2775 Male, age 80, right hemisphere 69.1
2029 Male, age 61, right hemisphere 63.5
1812 Female, age 91, both hemispheres 59.8
Putamen
nTPM: 71.7
1829 Male, age 74, unknown 83.3
2647 Male, age 75, left hemisphere 81.3
2466 Female, age 79, unknown 81.0
1937 Female, age 91, right hemisphere 75.9
1838 Male, age 80, right hemisphere 75.2
2489 Female, age 72, unknown 58.8
2482 Female, age 94, left hemisphere 46.4
Septal nuclei
nTPM: 81.7
1960 Male, age 74, unknown 125.9
2394 Male, age 61, left hemisphere 94.7
2059 Female, age 85, both hemispheres 81.2
2009 Female, age 91, both hemispheres 79.2
2199 Male, age 80, right hemisphere 64.7
2629 Female, age 94, right hemisphere 63.8
2031 Female, age 72, unknown 62.2
Stria terminalis, bed nucleus
nTPM: 81.4
2201 Male, age 74, unknown 89.7
1974 Female, age 91, both hemispheres 87.5
2486 Female, age 94, both hemispheres 67.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 228.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 180.2
Samples: 246

Max nTPM: 319.9
Min nTPM: 49.3
Std nTPM: 48.5
Median nTPM: 185.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 319.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 309.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 293.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 274.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 274.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 270.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 262.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 261.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 258.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 258.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 258.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 228.8
Samples: 246

Max nTPM: 398.5
Min nTPM: 38.6
Std nTPM: 67.5
Median nTPM: 232.1
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 398.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 383.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 381.1
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 359.0
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 356.4
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 351.6
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 347.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 344.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 341.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 340.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 334.3
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Brain - Putamen (basal ganglia)
Average nTPM: 178.2
Samples: 205

Max nTPM: 297.1
Min nTPM: 53.6
Std nTPM: 45.9
Median nTPM: 179.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 297.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 292.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 284.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 271.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 267.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 261.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 259.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 259.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 259.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 259.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 258.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 351.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 277.9
FF:10164-103B2 76 years, female 277.9
Nucleus accumbens
Scaled Tags Per Million: 315.6
FF:10037-101F1 23-56 years, mixed 315.6
Putamen
Scaled Tags Per Million: 351.7
FF:10176-103C5 60 years, female 351.7
Globus pallidus
Scaled Tags Per Million: 143.3
FF:10175-103C4 60 years, female 162.4
FF:10161-103A8 76 years, female 124.1

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 458.3
Pig sample Sample description nTPM
Caudate
nTPM: 458.4
Samples: 4

Max nTPM: 559.0
Min nTPM: 341.8
Sample A Female 341.8
Sample B Female 474.4
Sample C Male 559.0
Sample D Male 458.2
Putamen
nTPM: 456.7
Samples: 4

Max nTPM: 596.7
Min nTPM: 253.0
Sample A Female 253.0
Sample B Female 432.8
Sample C Male 596.7
Sample D Male 544.1
Septum
nTPM: 333.0
Samples: 4

Max nTPM: 355.0
Min nTPM: 318.2
Sample A Female 330.7
Sample B Female 318.2
Sample C Male 328.0
Sample D Male 355.0
Ventral pallidum
nTPM: 331.1
Samples: 4

Max nTPM: 349.0
Min nTPM: 305.2
Sample A Female 341.9
Sample B Female 305.2
Sample C Male 349.0
Sample D Male 328.1

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 492.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 492.5
Samples: 4

Max nTPM: 511.1
Min nTPM: 450.4
Sample A Male 499.1
Sample B Male 511.1
Sample C Female 450.4
Sample D Female 509.2
Septum
nTPM: 469.2
Samples: 4

Max nTPM: 546.2
Min nTPM: 428.7
Sample A Male 434.3
Sample B Male 546.2
Sample C Female 467.4
Sample D Female 428.7
Ventral forebrain
nTPM: 423.3
Samples: 4

Max nTPM: 473.2
Min nTPM: 392.3
Sample A Male 392.3
Sample B Male 427.0
Sample C Female 473.2
Sample D Female 400.7

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 20.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 20.7
68862120 Antisense, RP_050301_01_E12, Mouse strain C57BL/6J (56 days, male) 20.7
Pallidum
Expression energy: 18.5
68862120 Antisense, RP_050301_01_E12, Mouse strain C57BL/6J (56 days, male) 18.5

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