MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.8 nTPM
HPA Brain:187.5 nTPM
GTEx:41.8 nTPM
FANTOM5:166.8 Scaled Tags Per Million
Pig:98.6 nTPM
Mouse:115.0 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 187.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.5
1830 Male, age 51, unknown 190.1
2411 Female, age 72, unknown 175.8
1833 Male, age 53, unknown 168.8
2019 Male, age 18, unknown 158.7
1870 Female, age 42, unknown 144.3
2586 Male, age 75, left hemisphere 127.1
2828 Female, age 72, unknown 125.8
2219 Male, age 76, both hemispheres 114.8
2666 Male, age 74, left hemisphere 99.7
1827 Male, age 72, unknown 90.1
Dorsal raphe nucleus
nTPM: 95.2
2750 Male, age 76, both hemispheres 200.7
2016 Female, age 72, unknown 99.0
1828 Male, age 53, unknown 82.5
2047 Male, age 72, unknown 47.4
2298 Female, age 72, unknown 46.6
Inferior colliculus
nTPM: 80.9
2849 Male, age 72, unknown 92.2
1848 Female, age 42, unknown 86.0
1890 Male, age 53, unknown 82.5
2097 Female, age 72, unknown 63.0
Median raphe nucleus
nTPM: 78.0
2220 Male, age 76, midline 78.0
Periaquaductal grey, anterior
nTPM: 68.2
2502 Female, age 75, unknown 72.9
1947 Male, age 18, unknown 71.9
1795 Male, age 51, unknown 59.9
Periaquaductal grey, dorsal
nTPM: 56.2
2464 Female, age 72, unknown 96.0
1831 Male, age 72, unknown 61.7
2850 Male, age 76, both hemispheres 35.2
1840 Male, age 53, unknown 31.8
Periaquaductal grey, lateral
nTPM: 69.5
2272 Male, age 74, both hemispheres 99.1
2053 Male, age 18, unknown 73.3
2140 Male, age 76, both hemispheres 36.0
Pretectal area
nTPM: 78.4
1815 Male, age 53, unknown 120.4
2316 Male, age 76, right hemisphere 116.8
2407 Male, age 75, both hemispheres 104.8
1817 Female, age 42, unknown 84.5
2825 Male, age 18, unknown 83.5
2007 Male, age 72, unknown 83.3
2273 Male, age 74, both hemispheres 77.0
2224 Female, age 72, unknown 62.8
2667 Female, age 75, unknown 45.0
1944 Female, age 72, unknown 43.3
1816 Male, age 51, unknown 41.0
Red nucleus
nTPM: 187.5
1904 Male, age 53, unknown 221.0
2823 Male, age 76, right hemisphere 217.6
2769 Male, age 72, unknown 208.9
2227 Male, age 72, unknown 208.8
1865 Male, age 51, unknown 207.7
1821 Female, age 72, unknown 200.3
2785 Male, age 18, unknown 191.9
2503 Female, age 72, unknown 181.1
2588 Male, age 74, left hemisphere 169.6
1954 Female, age 42, unknown 165.5
2725 Female, age 75, unknown 151.0
2584 Male, age 75, left hemisphere 127.0
Substantia nigra
nTPM: 92.2
2590 Female, age 75, unknown 142.0
2583 Male, age 75, right hemisphere 122.8
1851 Male, age 51, unknown 115.0
1889 Female, age 72, unknown 96.1
2409 Female, age 72, unknown 93.2
2699 Male, age 18, unknown 91.4
1941 Male, age 53, unknown 73.2
2241 Male, age 72, unknown 65.6
1916 Female, age 42, unknown 63.4
2665 Male, age 74, both hemispheres 59.2
Superior colliculus
nTPM: 109.8
1995 Male, age 72, unknown 178.5
1913 Female, age 42, unknown 169.0
1839 Male, age 51, unknown 120.5
1895 Male, age 76, right hemisphere 119.7
2668 Female, age 75, unknown 119.2
2587 Male, age 74, left hemisphere 114.0
1796 Male, age 53, unknown 85.2
2664 Male, age 75, both hemispheres 74.2
2261 Male, age 18, unknown 59.7
2087 Female, age 72, unknown 57.9
Ventral tegmental area
nTPM: 108.7
2223 Female, age 72, unknown 162.8
2410 Female, age 72, unknown 130.3
2021 Male, age 53, unknown 96.7
2218 Male, age 76, both hemispheres 89.1
1942 Male, age 51, unknown 89.0
1915 Female, age 42, unknown 84.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.8
Samples: 139

Max nTPM: 191.0
Min nTPM: 3.4
Std nTPM: 30.0
Median nTPM: 33.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 191.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 161.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 111.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 104.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 98.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 92.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 91.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 90.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 90.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 88.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 87.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 166.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 166.8
FF:10158-103A5 76 years, female 166.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 98.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.1
Samples: 4

Max nTPM: 146.7
Min nTPM: 55.2
Sample A Female 99.4
Sample B Female 55.2
Sample C Male 63.1
Sample D Male 146.7
Midbrain
nTPM: 98.6
Samples: 4

Max nTPM: 215.4
Min nTPM: 42.4
Sample A Female 215.4
Sample B Female 84.6
Sample C Male 42.4
Sample D Male 51.9
Periaqueductal gray
nTPM: 63.8
Samples: 3

Max nTPM: 75.7
Min nTPM: 48.2
Sample B Female 75.7
Sample C Male 48.2
Sample D Male 67.5
Superior colliculi
nTPM: 75.1
Samples: 4

Max nTPM: 95.6
Min nTPM: 37.2
Sample A Female 90.9
Sample B Female 37.2
Sample C Male 76.8
Sample D Male 95.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 115.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.0
Samples: 4

Max nTPM: 120.8
Min nTPM: 110.8
Sample A Male 112.3
Sample B Male 110.8
Sample C Female 120.8
Sample D Female 116.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
69447978 Antisense, RP_050419_02_D12, Mouse strain C57BL/6J (56 days, male) 9.8

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