BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.6 nTPM
HPA Brain:35.3 nTPM
GTEx:51.6 nTPM
FANTOM5:56.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 35.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.6
2481 Female, age 94, left hemisphere 44.0
1857 Female, age 85, left hemisphere 30.1
2846 Female, age 79, unknown 20.2
1854 Male, age 80, left hemisphere 15.1
2288 Male, age 75, left hemisphere 13.2
1781 Male, age 74, unknown 8.0
2289 Male, age 61, right hemisphere 5.1
2290 Female, age 72, unknown 5.0
Globus pallidus, externus
nTPM: 30.8
1996 Male, age 80, right hemisphere 55.9
2772 Female, age 79, unknown 40.6
2395 Male, age 75, both hemispheres 25.1
2646 Male, age 61, right hemisphere 16.3
2567 Female, age 72, unknown 16.2
Globus pallidus, internus
nTPM: 22.8
2483 Female, age 94, right hemisphere 42.0
2037 Male, age 80, right hemisphere 31.9
1818 Male, age 74, unknown 29.9
2287 Male, age 75, right hemisphere 21.9
2778 Female, age 91, both hemispheres 13.1
2566 Female, age 72, unknown 10.5
2111 Female, age 85, right hemisphere 10.2
Nucleus accumbens
nTPM: 15.9
1856 Female, age 91, right hemisphere 27.1
2698 Female, age 72, unknown 22.9
1806 Female, age 85, left hemisphere 18.7
2732 Male, age 80, right hemisphere 15.7
2286 Male, age 75, left hemisphere 14.9
1783 Male, age 74, unknown 13.1
2391 Female, age 94, left hemisphere 10.1
2824 Male, age 61, right hemisphere 4.5
Nucleus basalis of Meynert
nTPM: 13.1
2569 Male, age 61, both hemispheres 16.5
2393 Male, age 80, right hemisphere 16.4
2484 Female, age 94, left hemisphere 14.6
2821 Male, age 75, both hemispheres 4.7
Nucleus of the diagonal band
nTPM: 8.0
2775 Male, age 80, right hemisphere 11.3
2195 Female, age 85, both hemispheres 10.3
1812 Female, age 91, both hemispheres 7.3
2029 Male, age 61, right hemisphere 5.9
1979 Male, age 74, unknown 5.0
Putamen
nTPM: 35.3
2489 Female, age 72, unknown 62.8
1838 Male, age 80, right hemisphere 44.9
2466 Female, age 79, unknown 40.1
2482 Female, age 94, left hemisphere 33.8
1829 Male, age 74, unknown 31.6
2647 Male, age 75, left hemisphere 21.8
1937 Female, age 91, right hemisphere 11.8
Septal nuclei
nTPM: 7.4
2059 Female, age 85, both hemispheres 14.3
1960 Male, age 74, unknown 10.7
2009 Female, age 91, both hemispheres 8.2
2031 Female, age 72, unknown 7.7
2629 Female, age 94, right hemisphere 5.1
2199 Male, age 80, right hemisphere 3.2
2394 Male, age 61, left hemisphere 2.6
Stria terminalis, bed nucleus
nTPM: 5.9
2486 Female, age 94, both hemispheres 13.3
1974 Female, age 91, both hemispheres 2.4
2201 Male, age 74, unknown 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 51.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.7
Samples: 246

Max nTPM: 400.8
Min nTPM: 0.0
Std nTPM: 35.7
Median nTPM: 11.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 400.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 138.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 137.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 133.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 129.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 124.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 114.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 101.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 98.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 86.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 81.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.8
Samples: 246

Max nTPM: 484.9
Min nTPM: 0.5
Std nTPM: 59.3
Median nTPM: 28.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 484.9
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 300.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 261.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 250.7
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 212.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 207.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 204.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 201.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 194.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 192.8
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 189.5
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Brain - Putamen (basal ganglia)
Average nTPM: 51.6
Samples: 205

Max nTPM: 543.1
Min nTPM: 0.9
Std nTPM: 71.4
Median nTPM: 27.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 543.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 397.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 364.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 330.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 264.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 253.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 222.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 221.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 197.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 175.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 173.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.3
FF:10164-103B2 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 2.8
FF:10037-101F1 23-56 years, mixed 2.8
Putamen
Scaled Tags Per Million: 32.4
FF:10176-103C5 60 years, female 32.4
Globus pallidus
Scaled Tags Per Million: 56.0
FF:10175-103C4 60 years, female 97.3
FF:10161-103A8 76 years, female 14.7

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