We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CCDC85C
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CCDC85C
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:24.5 nTPM
HPA Brain:49.1 nTPM
GTEx:24.5 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:5.9 nTPM
Mouse:29.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.1
Sample id Sample description nTPM
Amygdala
nTPM: 44.4
2517 Female, age 94, left hemisphere 53.8
2814 Male, age 76, right hemisphere 44.8
2514 Male, age 75, right hemisphere 44.1
1987 Female, age 91, left hemisphere 41.7
2695 Female, age 67, right hemisphere 37.7
Basal amygdala
nTPM: 47.8
2609 Male, age 75, right hemisphere 55.0
2827 Female, age 67, right hemisphere 54.9
2685 Female, age 94, left hemisphere 49.1
2243 Female, age 91, right hemisphere 46.3
1955 Male, age 76, both hemispheres 41.9
2110 Male, age 80, left hemisphere 39.8
Central amygdala
nTPM: 47.5
2515 Male, age 75, right hemisphere 52.5
2239 Male, age 80, left hemisphere 52.2
1905 Male, age 76, both hemispheres 47.3
2701 Female, age 91, right hemisphere 43.0
2826 Female, age 94, left hemisphere 42.9
Corticomedial amygdala
nTPM: 48.0
2535 Female, age 67, right hemisphere 61.3
2428 Male, age 75, right hemisphere 49.4
2429 Female, age 94, left hemisphere 47.8
2242 Female, age 91, right hemisphere 46.1
2240 Male, age 76, both hemispheres 44.8
2829 Male, age 80, left hemisphere 38.9
Lateral amygdala
nTPM: 49.1
2516 Male, age 75, right hemisphere 59.2
2255 Female, age 91, right hemisphere 53.3
2830 Female, age 67, right hemisphere 51.1
1883 Male, age 76, both hemispheres 47.0
2256 Male, age 80, left hemisphere 42.1
2534 Female, age 94, left hemisphere 41.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 24.5
Samples: 152

Max nTPM: 46.9
Min nTPM: 7.7
Std nTPM: 7.8
Median nTPM: 24.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 46.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 41.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 40.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 40.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 39.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 38.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 38.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 38.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 37.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 37.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 37.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 37.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 36.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 36.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 36.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 36.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 35.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 35.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 35.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 35.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 34.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 34.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 34.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 33.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 32.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 32.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 32.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 31.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 31.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 31.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 31.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 30.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 30.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 30.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 30.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 29.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 29.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 29.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 29.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 29.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 28.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 28.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 28.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 28.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 27.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 27.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 27.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 26.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 26.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 26.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 26.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 26.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 26.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 26.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 26.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 26.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 26.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 25.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 25.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 25.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 25.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 25.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 25.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 25.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 25.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 25.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 25.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 25.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 24.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 24.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 24.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 24.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 24.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 24.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 24.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 23.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 23.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 23.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 23.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 23.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 23.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 23.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 23.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 23.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 23.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 22.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 22.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 22.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 22.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 22.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 21.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 21.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 21.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 21.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 20.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 20.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 20.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 20.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 20.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 20.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 20.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 19.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 19.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 19.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 19.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 19.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 19.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 19.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 18.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 18.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 18.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 18.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 18.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 18.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 17.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 17.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 17.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 17.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 17.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 17.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 16.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 16.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 16.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 15.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 15.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 15.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 15.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 15.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 14.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 14.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 13.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 13.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 13.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 13.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 13.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 12.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 12.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 12.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 12.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 11.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 9.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 9.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 7.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 17.6
FF:10151-102I7 76 years, female 17.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.9
Pig sample Sample description nTPM
Amygdala
nTPM: 5.9
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.0
Sample A Female 6.7
Sample B Female 5.0
Sample C Male 5.2
Sample D Male 6.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.7
Samples: 4

Max nTPM: 35.2
Min nTPM: 27.0
Sample A Male 27.0
Sample B Male 29.2
Sample C Female 35.2
Sample D Female 27.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org