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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:87.8 nTPM
HPA Brain:85.3 nTPM
GTEx:87.8 nTPM
FANTOM5:87.2 Scaled Tags Per Million
Pig:47.3 nTPM
Mouse:96.3 nTPM
Allen mouse:2.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.3
Sample id Sample description nTPM
Amygdala
nTPM: 84.6
2695 Female, age 67, right hemisphere 102.8
2814 Male, age 76, right hemisphere 89.5
2514 Male, age 75, right hemisphere 86.9
2517 Female, age 94, left hemisphere 72.9
1987 Female, age 91, left hemisphere 70.9
Basal amygdala
nTPM: 78.1
2609 Male, age 75, right hemisphere 93.9
2243 Female, age 91, right hemisphere 91.8
2827 Female, age 67, right hemisphere 75.5
2685 Female, age 94, left hemisphere 72.9
2110 Male, age 80, left hemisphere 67.8
1955 Male, age 76, both hemispheres 67.0
Central amygdala
nTPM: 85.3
2826 Female, age 94, left hemisphere 96.6
2515 Male, age 75, right hemisphere 89.1
1905 Male, age 76, both hemispheres 87.0
2701 Female, age 91, right hemisphere 83.8
2239 Male, age 80, left hemisphere 70.1
Corticomedial amygdala
nTPM: 77.0
2428 Male, age 75, right hemisphere 91.3
2242 Female, age 91, right hemisphere 88.3
2829 Male, age 80, left hemisphere 73.9
2240 Male, age 76, both hemispheres 70.2
2429 Female, age 94, left hemisphere 69.4
2535 Female, age 67, right hemisphere 68.9
Lateral amygdala
nTPM: 79.7
2830 Female, age 67, right hemisphere 94.0
2516 Male, age 75, right hemisphere 87.8
1883 Male, age 76, both hemispheres 79.4
2534 Female, age 94, left hemisphere 78.7
2255 Female, age 91, right hemisphere 69.5
2256 Male, age 80, left hemisphere 68.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 87.8
Samples: 152

Max nTPM: 146.0
Min nTPM: 44.8
Std nTPM: 14.3
Median nTPM: 87.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 146.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 123.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 121.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 118.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 113.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 113.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 111.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 109.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 106.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 105.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 105.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 105.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 105.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 104.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 104.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 102.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 102.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 102.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 101.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 101.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 101.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 100.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 100.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 100.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 100.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 99.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 98.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 98.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 98.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 98.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 98.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 98.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 98.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 98.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 97.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 97.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 96.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 96.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 96.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 95.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 94.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 93.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 93.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 92.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 91.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 91.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 91.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 90.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 90.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 90.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 89.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 89.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 89.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 89.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 89.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 89.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 89.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 88.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 88.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 88.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 88.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 87.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 87.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 87.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 87.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 87.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 86.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 86.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 85.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 85.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 84.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 84.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 84.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 84.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 83.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 83.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 83.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 83.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 82.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 81.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 81.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 80.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 80.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 80.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 80.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 80.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 80.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 80.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 80.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 80.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 80.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 79.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 79.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 79.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 78.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 78.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 77.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 76.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 76.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 75.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 75.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 75.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 75.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 74.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 74.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 74.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 73.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 73.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 73.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 73.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 70.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 69.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 68.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 68.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 67.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 67.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 67.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 66.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 62.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 58.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 52.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 87.2
FF:10151-102I7 76 years, female 87.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.3
Pig sample Sample description nTPM
Amygdala
nTPM: 47.3
Samples: 4

Max nTPM: 61.3
Min nTPM: 40.9
Sample A Female 61.3
Sample B Female 43.0
Sample C Male 40.9
Sample D Male 43.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 96.3
Samples: 4

Max nTPM: 99.7
Min nTPM: 91.4
Sample A Male 97.8
Sample B Male 96.2
Sample C Female 99.7
Sample D Female 91.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
71789891 Antisense, RP_050921_03_G12, Mouse strain C57BL/6J (56 days, male) 2.5

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