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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:87.5 nTPM
HPA:64.8 nTPM
GTEx:87.5 nTPM
FANTOM5:172.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.8
overview
Male, age 65
Small intestine sample 232
nTPM: 71.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 79.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 52.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 55.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 87.5
Samples: 187

Max nTPM: 251.4
Min nTPM: 38.2
Std nTPM: 39.0
Median nTPM: 75.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 251.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 227.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 207.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 202.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 197.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 170.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 168.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 168.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 161.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 154.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 153.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 153.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 153.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 152.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 150.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 145.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 140.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 140.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 140.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 138.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 137.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 135.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 132.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 132.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 130.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 130.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 130.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 129.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 128.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 126.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 125.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 125.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 124.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 121.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 121.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 120.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 120.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 119.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 116.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 114.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 114.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 113.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 111.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 110.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 108.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 108.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 108.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 108.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 108.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 108.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 107.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 107.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 105.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 105.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 105.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 104.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 104.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 103.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 102.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 102.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 101.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 101.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 99.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 97.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 96.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 96.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 96.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 95.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 95.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 94.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 92.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 92.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 92.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 91.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 91.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 91.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 88.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 87.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 86.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 86.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 85.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 84.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 80.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 80.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 79.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 79.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 79.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 78.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 77.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 76.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 76.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 76.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 76.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 75.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 75.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 74.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 73.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 73.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 72.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 72.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 72.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 71.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 70.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 70.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 70.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 69.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 69.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 69.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 68.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 68.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 68.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 66.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 65.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 65.2
GTEX-1192X-2526-SM-59868 50-59 years, male 65.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 64.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 63.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 63.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 63.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 63.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 63.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 62.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 62.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 62.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 61.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 61.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 60.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 60.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 60.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 60.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 60.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 59.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 59.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 59.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 59.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 58.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 57.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 57.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 57.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 57.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 57.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 57.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 56.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 56.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 56.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 55.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 55.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 54.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 54.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 54.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 54.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 54.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 53.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 52.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 52.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 52.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 52.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 52.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 52.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 51.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 51.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 51.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 51.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 50.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 49.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 49.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 49.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 47.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 47.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 47.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 47.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 47.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 47.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 47.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 46.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 46.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 46.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 45.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 45.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 45.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 45.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 43.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 42.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 42.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 42.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 39.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 38.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

172.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 172.7
FF:10024-101D6 15,40,85 years, mixed 172.7

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