MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.3 nTPM
HPA Brain:6.7 nTPM
GTEx:65.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 6.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.9
2666 Male, age 74, left hemisphere 6.7
1827 Male, age 72, unknown 6.5
2586 Male, age 75, left hemisphere 6.1
1833 Male, age 53, unknown 6.0
2019 Male, age 18, unknown 5.7
1870 Female, age 42, unknown 5.4
2219 Male, age 76, both hemispheres 4.6
2828 Female, age 72, unknown 3.7
1830 Male, age 51, unknown 3.3
2411 Female, age 72, unknown 1.2
Dorsal raphe nucleus
nTPM: 5.2
2298 Female, age 72, unknown 6.9
2750 Male, age 76, both hemispheres 6.5
1828 Male, age 53, unknown 4.5
2016 Female, age 72, unknown 4.4
2047 Male, age 72, unknown 3.9
Inferior colliculus
nTPM: 5.9
1848 Female, age 42, unknown 6.3
2849 Male, age 72, unknown 6.0
2097 Female, age 72, unknown 5.8
1890 Male, age 53, unknown 5.7
Median raphe nucleus
nTPM: 5.8
2220 Male, age 76, midline 5.8
Periaquaductal grey, anterior
nTPM: 4.6
1947 Male, age 18, unknown 5.0
1795 Male, age 51, unknown 4.6
2502 Female, age 75, unknown 4.2
Periaquaductal grey, dorsal
nTPM: 4.0
1840 Male, age 53, unknown 6.0
2464 Female, age 72, unknown 4.2
1831 Male, age 72, unknown 3.5
2850 Male, age 76, both hemispheres 2.4
Periaquaductal grey, lateral
nTPM: 4.9
2140 Male, age 76, both hemispheres 6.0
2272 Male, age 74, both hemispheres 4.6
2053 Male, age 18, unknown 4.0
Pretectal area
nTPM: 6.7
1944 Female, age 72, unknown 7.7
2407 Male, age 75, both hemispheres 7.4
1817 Female, age 42, unknown 7.3
2316 Male, age 76, right hemisphere 7.3
2825 Male, age 18, unknown 6.8
1815 Male, age 53, unknown 6.7
2667 Female, age 75, unknown 6.6
2224 Female, age 72, unknown 6.3
2007 Male, age 72, unknown 6.1
2273 Male, age 74, both hemispheres 6.1
1816 Male, age 51, unknown 5.4
Red nucleus
nTPM: 5.2
2227 Male, age 72, unknown 7.0
2503 Female, age 72, unknown 6.4
1821 Female, age 72, unknown 5.7
1865 Male, age 51, unknown 5.7
2823 Male, age 76, right hemisphere 5.7
2584 Male, age 75, left hemisphere 5.2
1954 Female, age 42, unknown 5.0
2769 Male, age 72, unknown 4.7
2588 Male, age 74, left hemisphere 4.6
2785 Male, age 18, unknown 4.4
2725 Female, age 75, unknown 4.2
1904 Male, age 53, unknown 3.7
Substantia nigra
nTPM: 4.8
1941 Male, age 53, unknown 6.6
1916 Female, age 42, unknown 5.9
2241 Male, age 72, unknown 5.8
2665 Male, age 74, both hemispheres 5.5
1889 Female, age 72, unknown 5.4
2583 Male, age 75, right hemisphere 4.8
1851 Male, age 51, unknown 4.6
2590 Female, age 75, unknown 4.4
2699 Male, age 18, unknown 3.6
2409 Female, age 72, unknown 1.1
Superior colliculus
nTPM: 5.2
1839 Male, age 51, unknown 6.8
2668 Female, age 75, unknown 6.8
2261 Male, age 18, unknown 6.3
2087 Female, age 72, unknown 5.6
1796 Male, age 53, unknown 5.2
1913 Female, age 42, unknown 4.9
2664 Male, age 75, both hemispheres 4.8
2587 Male, age 74, left hemisphere 4.3
1895 Male, age 76, right hemisphere 3.6
1995 Male, age 72, unknown 3.4
Ventral tegmental area
nTPM: 4.8
2218 Male, age 76, both hemispheres 6.2
1915 Female, age 42, unknown 5.6
1942 Male, age 51, unknown 5.2
2223 Female, age 72, unknown 5.1
2410 Female, age 72, unknown 4.5
2021 Male, age 53, unknown 2.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.3
Samples: 139

Max nTPM: 180.4
Min nTPM: 29.3
Std nTPM: 24.2
Median nTPM: 61.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 180.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 140.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 132.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 118.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 113.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 113.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 112.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 112.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 111.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 110.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.9
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