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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:238.0 nTPM
GTEx:238.0 nTPM
FANTOM5:70.5 Scaled Tags Per Million
Pig:114.8 nTPM
Mouse:414.1 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 238.0
Samples: 105

Max nTPM: 483.7
Min nTPM: 123.6
Std nTPM: 73.0
Median nTPM:
490_1 67 years, female 483.7
379_1 60 years, male 460.8
491_1 89 years, female 455.3
35_1 74 years, female 399.5
42_1 85 years, male 396.0
117_1 61 years, male 387.2
347_1 72 years, male 375.9
142_1 61 years, female 374.3
126_1 63 years, male 359.7
375_1 74 years, female 355.2
386_1 76 years, male 354.8
447_1 81 years, male 330.8
162_1 79 years, female 328.9
6_1 73 years, female 327.7
115_1 83 years, male 303.7
237_1 82 years, male 303.1
389_1 86 years, female 297.4
243_1 75 years, male 295.7
315_1 62 years, female 293.0
9_1 66 years, female 291.5
145_1 84 years, male 284.6
120_1 70 years, female 278.4
139_1 64 years, female 276.2
43_1 64 years, female 274.3
468_1 89 years, male 273.1
99_1 64 years, male 271.4
313_1 79 years, female 271.2
307_1 66 years, female 268.6
265_1 87 years, male 267.2
17_1 71 years, male 264.8
308_1 70 years, female 263.9
4_1 88 years, female 262.5
153_1 70 years, female 261.5
291_1 76 years, male 256.9
119_1 70 years, female 253.7
355_1 70 years, female 250.1
311_1 78 years, male 249.8
217_1 76 years, male 249.4
41_1 94 years, female 248.7
18_1 88 years, male 246.6
415_1 77 years, female 245.9
32_1 67 years, male 244.1
506_1 65 years, male 242.7
322_1 76 years, male 241.9
2_1 77 years, female 238.6
518_1 75 years, female 237.4
81_1 67 years, male 234.9
499_1 55 years, female 232.9
324_1 76 years, male 230.6
348_1 84 years, male 228.6
109_1 81 years, female 228.1
189_1 76 years, male 223.5
452_1 88 years, female 220.1
356_1 87 years, female 219.7
149_1 88 years, male 217.0
352_1 62 years, male 217.0
354_1 81 years, female 215.7
495_1 57 years, female 214.4
526_1 61 years, male 211.0
414_1 84 years, female 209.1
517_1 88 years, male 208.8
89_1 63 years, male 207.6
218_1 71 years, female 206.3
335_1 73 years, female 206.0
319_1 81 years, male 204.3
292_1 71 years, male 202.3
317_1 60 years, male 199.5
173_1 67 years, male 198.1
316_1 62 years, male 197.9
394_1 75 years, female 196.4
503_1 68 years, male 193.2
246_1 77 years, male 192.2
251_1 78 years, male 191.3
318_1 68 years, male 189.3
350_1 84 years, female 188.3
466_1 57 years, female 188.3
264_1 73 years, female 185.9
384_1 83 years, male 185.2
314_1 67 years, male 184.3
321_1 62 years, female 183.5
501_1 88 years, male 183.4
266_1 85 years, male 180.6
137_1 83 years, male 177.8
229_1 69 years, female 176.5
406_1 79 years, male 174.9
254_1 77 years, female 174.7
286_1 68 years, female 173.1
396_1 62 years, male 173.1
425_1 59 years, female 171.7
288_1 66 years, female 171.2
353_1 82 years, female 171.0
293_1 68 years, female 170.1
376_1 75 years, female 169.6
351_1 91 years, male 168.5
377_1 82 years, female 167.0
405_1 91 years, male 166.6
320_1 89 years, female 165.7
480_1 63 years, male 163.0
404_1 82 years, female 160.3
177_1 74 years, male 151.3
172_1 72 years, female 147.9
413_1 59 years, female 136.1
349_1 83 years, male 135.1
295_1 61 years, female 127.3
163_1 78 years, male 123.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 70.5
FF:10030-101E3 24-65 years, mixed 70.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
Pig sample Sample description nTPM
Retina
nTPM: 114.8
Samples: 4

Max nTPM: 121.3
Min nTPM: 110.0
Sample A Female 110.0
Sample B Female 121.3
Sample C Male 115.5
Sample D Male 112.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.1
Mouse sample Sample description nTPM
Retina
nTPM: 414.1
Samples: 4

Max nTPM: 503.4
Min nTPM: 361.0
Sample A Male 391.1
Sample B Male 400.9
Sample C Female 503.4
Sample D Female 361.0

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