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HMGN1
HPA
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  • HMGN1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HMGN1
Synonyms FLJ27265, FLJ31471, HMG14, MGC104230, MGC117425
Gene descriptioni

Full gene name according to HGNC.

High mobility group nucleosome binding domain 1
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.2
Chromosome location (bp) 39342315 - 39349647
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000205581 (version 109)
Entrez gene 3150
HGNC HGNC:4984
UniProt P05114 (UniProt - Evidence at protein level)
neXtProt NX_P05114
GeneCards HMGN1
Antibodypedia HMGN1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer. May be involved in the process which maintains transcribable genes in a unique chromatin conformation. Inhibits the phosphorylation of nucleosomal histones H3 and H2A by RPS6KA5/MSK1 and RPS6KA3/RSK2 (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

DNA-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene binds nucleosomal DNA and is associated with transcriptionally active chromatin. Along with a similar protein, HMG17, the encoded protein may help maintain an open chromatin configuration around transcribable genes. [provided by RefSeq, Aug 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HMGN1-202
ENSP00000370123
ENST00000380747
A6NEL0
[Direct mapping] Non-histone chromosomal protein HMG-14
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000785 [chromatin]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0031492 [nucleosomal DNA binding]
Show all
116 aa
12.4 kDa
No 0
HMGN1-203
ENSP00000370124
ENST00000380748
A6NL93
[Direct mapping] Non-histone chromosomal protein HMG-14
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000785 [chromatin]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0031492 [nucleosomal DNA binding]
Show all
90 aa
9.5 kDa
No 0
HMGN1-204
ENSP00000370125
ENST00000380749
P05114
[Direct mapping] Non-histone chromosomal protein HMG-14
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000720 [pyrimidine dimer repair by nucleotide-excision repair]
GO:0000785 [chromatin]
GO:0001674 [female germ cell nucleus]
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0006283 [transcription-coupled nucleotide-excision repair]
GO:0006325 [chromatin organization]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0010224 [response to UV-B]
GO:0010225 [response to UV-C]
GO:0031492 [nucleosomal DNA binding]
GO:0032786 [positive regulation of DNA-templated transcription, elongation]
GO:0040034 [regulation of development, heterochronic]
GO:0048597 [post-embryonic camera-type eye morphogenesis]
GO:0050678 [regulation of epithelial cell proliferation]
GO:1901666 [positive regulation of NAD+ ADP-ribosyltransferase activity]
Show all
100 aa
10.7 kDa
No 0

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