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ITSN1
HPA
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  • ITSN1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ITSN1
Synonyms ITSN, MGC134948, MGC134949, SH3D1A, SH3P17
Gene descriptioni

Full gene name according to HGNC.

Intersectin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 21
Cytoband q22.11
Chromosome location (bp) 33642400 - 33899861
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

17
Ensembl ENSG00000205726 (version 109)
Entrez gene 6453
HGNC HGNC:6183
UniProt Q15811 (UniProt - Evidence at protein level)
neXtProt NX_Q15811
GeneCards ITSN1
Antibodypedia ITSN1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Adapter protein that provides a link between the endocytic membrane traffic and the actin assembly machinery 1, 2. Acts as a guanine nucleotide exchange factor (GEF) for CDC42, and thereby stimulates actin nucleation mediated by WASL and the ARP2/3 complex 3. Plays a role in the assembly and maturation of clathrin-coated vesicles (By similarity). Recruits FCHSD2 to clathrin-coated pits 4. Involved in endocytosis of activated EGFR, and probably also other growth factor receptors (By similarity). Involved in endocytosis of integrin beta-1 (ITGB1) and transferrin receptor (TFR); internalization of ITGB1 as DAB2-dependent cargo but not TFR may involve association with DAB2 5. Promotes ubiquitination and subsequent degradation of EGFR, and thereby contributes to the down-regulation of EGFR-dependent signaling pathways. In chromaffin cells, required for normal exocytosis of catecholamines. Required for rapid replenishment of release-ready synaptic vesicles at presynaptic active zones (By similarity). Inhibits ARHGAP31 activity toward RAC1 6.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Endocytosis, Exocytosis, Host-virus interaction, Protein transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Calcium, Metal-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a cytoplasmic membrane-associated protein that indirectly coordinates endocytic membrane traffic with the actin assembly machinery. In addition, the encoded protein may regulate the formation of clathrin-coated vesicles and could be involved in synaptic vesicle recycling. This protein has been shown to interact with dynamin, CDC42, SNAP23, SNAP25, SPIN90, EPS15, EPN1, EPN2, and STN2. Multiple transcript variants encoding different isoforms have been found for this gene, but the full-length nature of only two of them have been characterized so far. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ITSN1-201
ENSP00000369294
ENST00000379960
D6PAW0
[Direct mapping] Intersectin 1 short form A variant 3; Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
Show all
237 aa
25.1 kDa
No 0
ITSN1-202
ENSP00000370683
ENST00000381283
C9JQZ7
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
Show all
361 aa
41 kDa
No 0
ITSN1-203
ENSP00000370684
ENST00000381284
H0Y3G5
[Direct mapping] Intersectin-1
Q6J1T2
[Target identity:100%; Query identity:100%] Intersectin 1 isoform 7
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
Show all
317 aa
36.2 kDa
No 0
ITSN1-204
ENSP00000370685
ENST00000381285
A8CTZ0
[Direct mapping] Intersectin 1 short form variant 13; Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0110165 [cellular anatomical entity]
Show all
877 aa
100.7 kDa
No 0
ITSN1-205
ENSP00000370691
ENST00000381291
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1220 aa
137.6 kDa
No 0
ITSN1-206
ENSP00000370719
ENST00000381318
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1721 aa
195.4 kDa
No 0
ITSN1-207
ENSP00000382275
ENST00000399338
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1020 aa
115.9 kDa
No 1
ITSN1-208
ENSP00000382286
ENST00000399349
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1144 aa
129.4 kDa
No 0
ITSN1-209
ENSP00000382289
ENST00000399352
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1215 aa
137 kDa
No 0
ITSN1-210
ENSP00000382290
ENST00000399353
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1178 aa
133.6 kDa
No 0
ITSN1-211
ENSP00000382292
ENST00000399355
F8W7U0
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0046872 [metal ion binding]
GO:0110165 [cellular anatomical entity]
Show all
1149 aa
130 kDa
No 0
ITSN1-212
ENSP00000382301
ENST00000399367
Q15811
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005635 [nuclear envelope]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0005905 [clathrin-coated pit]
GO:0006887 [exocytosis]
GO:0006897 [endocytosis]
GO:0008104 [protein localization]
GO:0012505 [endomembrane system]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0016197 [endosomal transport]
GO:0030027 [lamellipodium]
GO:0031410 [cytoplasmic vesicle]
GO:0035556 [intracellular signal transduction]
GO:0042995 [cell projection]
GO:0043005 [neuron projection]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0051056 [regulation of small GTPase mediated signal transduction]
GO:0055037 [recycling endosome]
GO:0060090 [molecular adaptor activity]
GO:0070064 [proline-rich region binding]
GO:0098793 [presynapse]
GO:0150007 [clathrin-dependent synaptic vesicle endocytosis]
Show all
1716 aa
194.8 kDa
No 0
ITSN1-213
ENSP00000409800
ENST00000415023
Q6J334
[Direct mapping] Intersectin 1 isoform 10; Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
173 aa
19.8 kDa
No 0
ITSN1-218
ENSP00000396054
ENST00000440794
H0Y523
[Direct mapping] Intersectin-1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0016020 [membrane]
Show all
260 aa
28.1 kDa
No 1
ITSN1-219
ENSP00000400079
ENST00000444491
C9J1A4
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
Show all
115 aa
12.8 kDa
No 0
ITSN1-220
ENSP00000407132
ENST00000451686
C9JXS9
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
Show all
78 aa
8.8 kDa
No 0
ITSN1-221
ENSP00000411464
ENST00000456489
H7C3F1
[Direct mapping] Intersectin-1
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
Show all
60 aa
6.3 kDa
No 0

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