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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:32.1 nTPM
HPA Brain:14.0 nTPM
GTEx:32.1 nTPM
FANTOM5:78.8 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:45.9 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.0
Sample id Sample description nTPM
Amygdala
nTPM: 14.0
2814 Male, age 76, right hemisphere 16.4
1987 Female, age 91, left hemisphere 14.3
2514 Male, age 75, right hemisphere 13.7
2517 Female, age 94, left hemisphere 12.8
2695 Female, age 67, right hemisphere 12.8
Basal amygdala
nTPM: 11.7
2609 Male, age 75, right hemisphere 13.9
1955 Male, age 76, both hemispheres 13.7
2110 Male, age 80, left hemisphere 13.2
2243 Female, age 91, right hemisphere 11.4
2685 Female, age 94, left hemisphere 10.5
2827 Female, age 67, right hemisphere 7.4
Central amygdala
nTPM: 12.8
1905 Male, age 76, both hemispheres 14.9
2701 Female, age 91, right hemisphere 13.2
2826 Female, age 94, left hemisphere 12.6
2239 Male, age 80, left hemisphere 11.8
2515 Male, age 75, right hemisphere 11.5
Corticomedial amygdala
nTPM: 12.6
2240 Male, age 76, both hemispheres 15.7
2428 Male, age 75, right hemisphere 13.8
2429 Female, age 94, left hemisphere 13.6
2242 Female, age 91, right hemisphere 11.7
2829 Male, age 80, left hemisphere 11.7
2535 Female, age 67, right hemisphere 9.1
Lateral amygdala
nTPM: 11.7
1883 Male, age 76, both hemispheres 17.0
2516 Male, age 75, right hemisphere 13.7
2534 Female, age 94, left hemisphere 11.8
2256 Male, age 80, left hemisphere 9.8
2830 Female, age 67, right hemisphere 9.4
2255 Female, age 91, right hemisphere 8.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 32.1
Samples: 152

Max nTPM: 93.2
Min nTPM: 14.3
Std nTPM: 11.3
Median nTPM: 30.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 93.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 78.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 73.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 67.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 57.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 55.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 53.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 52.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 51.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 49.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 49.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 47.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 46.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 45.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 41.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 41.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 41.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 41.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 41.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 41.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 40.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 40.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 40.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 40.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 39.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 39.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 38.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 38.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 38.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 38.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 38.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 37.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 37.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 37.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 37.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 36.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 35.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 35.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 35.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 35.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 35.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 35.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 35.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 35.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 34.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 34.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 34.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 34.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 34.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 34.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 33.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 33.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 32.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 32.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 32.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 32.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 31.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 31.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 31.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 31.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 31.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 31.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 31.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 31.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 31.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 30.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 30.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 30.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 30.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 30.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 30.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 30.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 30.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 30.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 30.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 29.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 29.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 29.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 29.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 29.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 29.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 28.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 28.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 28.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 28.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 28.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 28.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 28.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 27.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 27.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 27.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 27.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 27.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 27.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 27.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 27.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 26.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 26.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 26.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 26.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 26.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 26.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 25.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 25.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 25.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 25.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 25.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 25.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 25.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 25.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 25.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 25.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 25.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 24.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 24.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 24.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 23.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 23.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 23.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 23.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 23.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 23.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 23.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 23.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 22.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 22.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 21.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 21.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 21.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 21.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 21.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 21.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 21.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 21.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 20.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 20.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 20.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 20.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 20.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 20.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 19.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 18.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 18.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 15.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 14.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 78.8
FF:10151-102I7 76 years, female 78.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.1
Pig sample Sample description nTPM
Amygdala
nTPM: 26.1
Samples: 4

Max nTPM: 32.2
Min nTPM: 20.0
Sample A Female 32.2
Sample B Female 28.9
Sample C Male 20.0
Sample D Male 23.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 45.9
Samples: 4

Max nTPM: 54.9
Min nTPM: 38.9
Sample A Male 38.9
Sample B Male 45.1
Sample C Female 54.9
Sample D Female 44.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
70474881 Antisense, RP_050623_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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