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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:117.6 nTPM
HPA Brain:50.7 nTPM
GTEx:117.6 nTPM
FANTOM5:211.2 Scaled Tags Per Million
Pig:45.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 47.1
2816 Male, age 47, midline 56.5
1981 Female, age 72, midline 54.6
2048 Male, age 55, midline 47.6
2194 Female, age 79, both hemispheres 39.7
2565 Male, age 75, midline 37.2
Cervical spinal cord, dorsal horn
nTPM: 48.5
2296 Male, age 66, both hemispheres 97.5
2173 Female, age 72, unknown 76.6
2069 Male, age 47, both hemispheres 43.8
1877 Male, age 55, unknown 36.8
2721 Male, age 90, both hemispheres 22.0
2297 Male, age 75, both hemispheres 14.4
Cervical spinal cord, ventral horn
nTPM: 50.7
2098 Female, age 72, unknown 65.2
2480 Male, age 75, both hemispheres 50.6
2068 Male, age 55, unknown 49.2
2820 Female, age 79, both hemispheres 47.4
2809 Male, age 90, both hemispheres 46.3
2295 Male, age 66, both hemispheres 45.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 117.6
Samples: 159

Max nTPM: 269.0
Min nTPM: 19.0
Std nTPM: 45.9
Median nTPM: 113.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 269.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 234.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 229.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 207.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 206.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 199.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 197.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 191.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 190.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 187.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 183.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 181.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 179.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 178.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 177.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 176.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 176.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 173.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 173.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 172.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 171.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 171.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 170.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 169.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 166.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 158.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 157.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 157.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 157.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 152.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 151.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 151.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 150.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 149.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 148.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 147.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 147.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 147.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 146.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 146.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 145.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 145.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 145.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 145.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 144.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 144.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 144.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 140.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 139.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 138.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 137.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 136.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 135.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 135.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 135.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 135.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 133.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 131.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 129.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 129.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 128.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 128.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 124.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 121.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 120.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 117.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 117.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 116.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 115.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 115.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 113.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 113.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 113.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 112.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 110.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 109.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 109.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 108.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 108.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 108.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 108.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 106.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 105.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 104.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 104.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 101.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 101.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 101.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 101.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 100.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 99.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 97.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 96.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 96.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 96.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 95.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 94.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 94.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 93.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 92.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 92.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 91.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 88.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 88.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 86.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 85.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 84.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 83.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 83.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 80.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 80.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 79.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 79.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 78.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 78.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 77.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 77.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 75.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 70.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 70.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 70.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 70.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 70.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 69.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 65.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 64.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 64.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 63.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 62.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 58.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 57.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 57.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 57.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 55.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 49.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 48.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 48.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 47.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 36.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 35.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 27.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 22.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 19.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 211.2
FF:10181-103D1 60 years, female 300.6
FF:10159-103A6 76 years, female 121.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 39.1
Samples: 4

Max nTPM: 42.8
Min nTPM: 37.1
Sample A Female 37.1
Sample B Female 38.8
Sample C Male 42.8
Sample D Male 37.6
Ventral spinal cord
nTPM: 45.8
Samples: 4

Max nTPM: 54.1
Min nTPM: 38.6
Sample A Female 47.4
Sample B Female 42.9
Sample C Male 38.6
Sample D Male 54.1

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