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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.4 nTPM
HPA:14.1 nTPM
GTEx:82.4 nTPM
FANTOM5:0.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043780Antibody CAB032534
Glandular cells Not detectedLow




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.1
overview
Male, age 65
Small intestine sample 232
nTPM: 6.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 21.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 11.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 16

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 82.4
Samples: 187

Max nTPM: 4015.8
Min nTPM: 0.0
Std nTPM: 333.7
Median nTPM: 7.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4015.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1273.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1214.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 960.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 708.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 580.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 415.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 397.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 317.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 279.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 265.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 248.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 241.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 233.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 197.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 177.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 167.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 158.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 157.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 145.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 140.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 117.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 114.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 112.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 106.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 99.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 96.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 95.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 88.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 84.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 76.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 74.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 67.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 66.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 63.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 62.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 61.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 60.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 59.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 57.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 56.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 50.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 49.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 48.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 46.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 44.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 43.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 41.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 37.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 36.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 36.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 35.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 35.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 35.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 32.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 31.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 31.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 28.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 26.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 26.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 25.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 24.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 23.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 21.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 21.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 20.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 19.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 18.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 18.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 17.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 17.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 16.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 15.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 15.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 15.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 15.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 14.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 13.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 13.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 13.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 12.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 12.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 12.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 10.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 9.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 9.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 8.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 7.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 7.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 7.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 7.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 7.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 7.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 7.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 7.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 7.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 6.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 6.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 6.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 6.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 6.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 5.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 5.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 5.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 5.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 5.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 5.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 5.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 5.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 5.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 4.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 4.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 4.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 4.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 4.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 4.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 4.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 4.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 4.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 4.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 4.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 4.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 3.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 3.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 3.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 3.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 2.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 2.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 2.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 2.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 0.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 0.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 0.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 0.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 0.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 0.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 0.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 0.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 0.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 0.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 0.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 0.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 0.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 0.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 0.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 0.0
FF:10024-101D6 15,40,85 years, mixed 0.0

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