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RAB12
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  • RAB12
TISSUE PRIMARY DATA CEREBRAL CORTEX Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION KIDNEY LIVER LUNG LYMPH NODE NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Cerebral cortex
Tissue proteome
Cerebral cortex
CEREBRAL CORTEX - Expression summary
Protein expression
Cerebral cortexi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endothelial cells: Medium
Glial cells: High
Neuronal cells: High
Neuropil: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:30.6 nTPM
HPA:30.6 nTPM
HPA Brain:40.8 nTPM
HPA PFC Brain:23.1 nTPM
FANTOM5:129.5 Scaled Tags Per Million
Pig:86.8 nTPM
Mouse:93.5 nTPM
Allen mouse:9.7 Expression energy

CEREBRAL CORTEX - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040727
Endothelial cells Medium
Glial cells High
Neuronal cells High
Neuropil Medium


CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.6
N/A
Male, age 5
Cerebral cortex sample 48
nTPM: 38.9
overview
Female, age 40
Cerebral cortex sample 105
nTPM: 23.3
Cell types%
Neuronal cells:
35

Glial cells and endothelial cells:
65

overview
Male, age 70
Cerebral cortex sample 106
nTPM: 29.5
Cell types%
Neuronal cells:
35

Glial cells and endothelial cells:
65


CEREBRAL CORTEX - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.8
Sample id Sample description nTPM
Angular gyrus
nTPM: 33.9
2221 Female, age 67, right hemisphere 41.1
1866 Male, age 76, both hemispheres 38.4
2260 Female, age 72, left hemisphere 38.1
2103 Male, age 75, left hemisphere 34.1
2602 Female, age 94, right hemisphere 32.0
1790 Male, age 76, right hemisphere 31.4
2722 Male, age 61, left hemisphere 29.2
2265 Female, age 91, left hemisphere 27.3
Anterior cingulate cortex, supragenual-dorsal
nTPM: 31.9
1896 Female, age 85, right hemisphere 36.4
2472 Male, age 75, left hemisphere 33.4
2547 Male, age 74, left hemisphere 32.9
2478 Female, age 67, right hemisphere 29.2
2342 Female, age 94, right hemisphere 27.6
Anterior cingulate cortex, supragenual-ventral
nTPM: 28.4
1950 Female, age 85, right hemisphere 31.1
1755 Female, age 94, right hemisphere 28.1
1761 Male, age 74, left hemisphere 28.1
2479 Female, age 67, right hemisphere 27.9
2538 Male, age 75, left hemisphere 26.9
Anterior insular cortex, dorsal
nTPM: 31.4
2506 Female, age 94, right hemisphere 37.0
2001 Male, age 76, right hemisphere 32.7
2235 Female, age 91, right hemisphere 29.2
2670 Male, age 75, left hemisphere 26.9
Anterior insular cortex, ventral
nTPM: 35.6
1925 Female, age 91, left hemisphere 45.1
2507 Female, age 94, left hemisphere 35.7
1852 Male, age 76, left hemisphere 35.3
2757 Male, age 61, right hemisphere 34.3
2262 Female, age 67, right hemisphere 33.9
2596 Male, age 75, left hemisphere 29.3
Area parastriata, inferior
nTPM: 31.7
2234 Male, age 75, left hemisphere 37.6
1758 Female, age 72, right hemisphere 33.2
1760 Female, age 67, left hemisphere 32.4
2268 Male, age 61, right hemisphere 32.1
1789 Male, age 76, right hemisphere 31.0
2509 Female, age 94, left hemisphere 28.1
2421 Female, age 91, left hemisphere 27.5
Area parastriata, parietal
nTPM: 32.8
2420 Male, age 75, left hemisphere 35.1
2680 Female, age 94, right hemisphere 34.2
2236 Female, age 91, left hemisphere 32.0
2233 Male, age 61, right hemisphere 31.5
1785 Male, age 76, right hemisphere 31.3
Area parastriata, superior
nTPM: 32.8
1773 Female, age 91, left hemisphere 37.7
2881 Male, age 76, left hemisphere 35.4
2419 Male, age 75, right hemisphere 33.6
2435 Male, age 61, left hemisphere 30.9
2604 Female, age 94, right hemisphere 29.9
2684 Female, age 67, left hemisphere 29.3
Area parastriata, temporal
nTPM: 32.1
2471 Male, age 75, left hemisphere 33.9
2424 Female, age 67, left hemisphere 33.5
1804 Male, age 76, right hemisphere 32.7
2681 Female, age 94, right hemisphere 31.1
2267 Male, age 61, right hemisphere 29.3
Area striata
nTPM: 32.4
2417 Male, age 61, right hemisphere 38.7
1753 Female, age 72, right hemisphere 35.9
2427 Female, age 91, left hemisphere 30.5
2679 Female, age 94, right hemisphere 30.5
1884 Male, age 76, left hemisphere 30.2
2002 Female, age 91, right hemisphere 28.9
Claustrum
nTPM: 39.7
2198 Male, age 80, both hemispheres 46.3
2196 Female, age 79, unknown 43.8
1956 Male, age 74, unknown 42.9
2284 Female, age 91, both hemispheres 42.9
2645 Female, age 72, unknown 39.8
2568 Male, age 61, both hemispheres 36.3
2392 Female, age 94, both hemispheres 35.6
2292 Female, age 85, both hemispheres 34.9
2491 Male, age 75, both hemispheres 34.9
Frontal eye field
nTPM: 32.3
2761 Female, age 94, left hemisphere 34.8
2543 Male, age 74, left hemisphere 32.0
2147 Male, age 61, left hemisphere 31.6
2441 Male, age 75, left hemisphere 30.6
Frontal operculum
nTPM: 32.4
2348 Male, age 75, left hemisphere 33.5
2781 Female, age 85, right hemisphere 32.8
2030 Male, age 61, right hemisphere 31.0
Fusiform gyrus
nTPM: 36.7
2433 Female, age 72, left hemisphere 43.8
2112 Male, age 80, both hemispheres 38.8
2784 Female, age 85, left hemisphere 37.9
2074 Female, age 91, left hemisphere 35.5
1807 Male, age 76, left hemisphere 35.4
2431 Male, age 75, right hemisphere 33.4
2617 Female, age 94, left hemisphere 32.1
Inferior frontal gyrus, opercular
nTPM: 32.6
2873 Female, age 85, left hemisphere 36.9
2866 Male, age 61, right hemisphere 35.2
2872 Female, age 94, right hemisphere 34.7
2865 Male, age 61, left hemisphere 34.3
2871 Female, age 94, left hemisphere 32.6
2868 Male, age 75, right hemisphere 31.6
2875 Female, age 67, left hemisphere 31.2
2874 Female, age 85, right hemisphere 31.1
2867 Male, age 75, left hemisphere 30.1
2869 Male, age 74, left hemisphere 28.5
Inferior parietal lobule
nTPM: 31.3
2418 Male, age 75, left hemisphere 39.4
2606 Female, age 67, right hemisphere 32.3
2599 Female, age 94, left hemisphere 29.1
2876 Male, age 76, right hemisphere 24.4
Inferior temporal gyrus
nTPM: 37.4
1880 Male, age 80, right hemisphere 45.5
2430 Male, age 75, right hemisphere 38.1
1965 Female, age 91, left hemisphere 37.8
1970 Female, age 85, right hemisphere 35.7
1808 Male, age 76, left hemisphere 35.4
2689 Female, age 94, right hemisphere 31.6
Intraparietal deep sulcus
nTPM: 30.6
2230 Male, age 61, right hemisphere 36.4
2798 Male, age 76, left hemisphere 33.5
2600 Female, age 94, right hemisphere 29.2
2607 Female, age 67, right hemisphere 28.5
2102 Female, age 91, left hemisphere 28.1
2669 Male, age 75, left hemisphere 27.8
Lingual gyrus
nTPM: 35.1
2838 Male, age 80, right hemisphere 42.5
1893 Male, age 76, left hemisphere 35.4
2688 Male, age 75, right hemisphere 34.4
2073 Female, age 85, left hemisphere 32.0
2618 Female, age 94, left hemisphere 31.2
Middle cingulate cortex
nTPM: 29.2
2357 Female, age 67, right hemisphere 32.6
2028 Female, age 85, left hemisphere 32.3
2640 Female, age 94, right hemisphere 28.2
2539 Male, age 75, left hemisphere 26.4
2633 Male, age 74, left hemisphere 26.3
Middle temporal gyrus
nTPM: 34.1
1819 Male, age 80, right hemisphere 39.1
1799 Male, age 76, left hemisphere 35.4
2034 Female, age 91, right hemisphere 34.6
2616 Female, age 94, left hemisphere 31.7
2611 Male, age 75, right hemisphere 30.0
Occipital cortex
nTPM: 33.4
1842 Male, age 76, right hemisphere 36.4
2470 Male, age 75, right hemisphere 35.4
2426 Male, age 75, midline 34.8
2677 Female, age 67, right hemisphere 30.3
2608 Female, age 67, both hemispheres 30.2
Olfactory area
nTPM: 36.8
2756 Female, age 67, right hemisphere 43.2
2222 Female, age 67, right hemisphere 42.1
1805 Female, age 85, right hemisphere 38.7
2352 Female, age 94, right hemisphere 36.1
2440 Male, age 75, left hemisphere 33.8
2542 Male, age 74, left hemisphere 26.9
Olfactory tubercle
nTPM: 36.9
1846 Male, age 80, right hemisphere 42.6
1998 Female, age 91, both hemispheres 40.7
2487 Female, age 94, left hemisphere 34.3
2856 Male, age 75, right hemisphere 29.8
Orbitofrontal gyrus, anterior
nTPM: 31.9
2863 Female, age 85, right hemisphere 48.7
2864 Female, age 67, left hemisphere 27.4
2862 Female, age 85, left hemisphere 19.7
Paracentral lobule, anterior
nTPM: 35.3
1776 Female, age 85, right hemisphere 38.2
1926 Male, age 61, left hemisphere 37.2
1754 Male, age 75, left hemisphere 36.4
2474 Male, age 74, left hemisphere 35.8
2340 Female, age 67, right hemisphere 35.0
2638 Female, age 94, right hemisphere 29.3
Paracentral lobule, posterior
nTPM: 31.1
1775 Female, age 85, right hemisphere 35.4
2345 Male, age 61, left hemisphere 32.6
2551 Female, age 94, right hemisphere 31.1
1764 Male, age 74, right hemisphere 29.9
2446 Male, age 75, left hemisphere 26.7
Parietal operculum
nTPM: 30.9
2356 Female, age 67, right hemisphere 34.1
2719 Male, age 75, left hemisphere 30.5
2552 Female, age 94, right hemisphere 30.1
1763 Male, age 74, left hemisphere 28.8
Parieto-insular cortex
nTPM: 33.8
1976 Female, age 91, right hemisphere 45.3
2831 Male, age 76, right hemisphere 33.5
2232 Male, age 61, right hemisphere 31.8
2671 Male, age 75, left hemisphere 30.4
2508 Female, age 94, right hemisphere 28.1
Parieto-occipital transitional area
nTPM: 30.6
1784 Male, age 76, right hemisphere 32.5
2468 Male, age 75, left hemisphere 32.5
2674 Female, age 94, right hemisphere 31.9
2270 Male, age 61, right hemisphere 30.1
2683 Female, age 67, left hemisphere 25.7
Piriform cortex
nTPM: 26.4
2347 Male, age 75, right hemisphere 32.0
2153 Female, age 85, left hemisphere 20.7
Postcentral gyrus
nTPM: 35.4
2533 Male, age 75, right hemisphere 35.4
Postcentral gyrus, dorsal
nTPM: 34.5
1836 Female, age 85, right hemisphere 40.1
2350 Male, age 75, left hemisphere 36.2
2477 Female, age 94, right hemisphere 35.1
2151 Male, age 61, left hemisphere 34.2
2339 Female, age 67, right hemisphere 33.0
2544 Male, age 74, left hemisphere 28.6
Postcentral gyrus, middle
nTPM: 34.1
2146 Female, age 67, right hemisphere 37.7
1897 Female, age 85, right hemisphere 37.3
2248 Male, age 61, left hemisphere 35.8
2444 Male, age 75, left hemisphere 30.5
2545 Male, age 74, left hemisphere 29.4
Postcentral gyrus, ventral
nTPM: 32.8
2445 Male, age 75, left hemisphere 34.9
2836 Female, age 94, right hemisphere 33.1
2024 Female, age 85, right hemisphere 30.5
Posterior cingulate cortex
nTPM: 32.8
2473 Male, age 75, left hemisphere 35.0
2553 Female, age 94, right hemisphere 33.7
1759 Male, age 74, right hemisphere 29.6
Posterior cingulate cortex, dorsal
nTPM: 28.4
2641 Female, age 94, right hemisphere 33.6
2076 Female, age 85, right hemisphere 32.0
2540 Male, age 75, right hemisphere 28.2
2343 Male, age 61, left hemisphere 26.2
2556 Female, age 67, right hemisphere 25.1
2634 Male, age 74, left hemisphere 25.1
Posterior cingulate cortex, ventral
nTPM: 29.7
2346 Male, age 61, left hemisphere 31.3
1762 Female, age 94, right hemisphere 31.2
1994 Female, age 85, right hemisphere 30.8
2448 Female, age 67, right hemisphere 30.1
2635 Male, age 74, left hemisphere 27.9
2541 Male, age 75, right hemisphere 27.0
Posterior insular cortex
nTPM: 34.5
2832 Female, age 91, right hemisphere 41.2
2511 Female, age 67, right hemisphere 35.8
2603 Female, age 94, left hemisphere 35.7
1823 Male, age 76, right hemisphere 32.5
2597 Male, age 75, left hemisphere 31.0
2231 Male, age 61, left hemisphere 30.8
Precentral gyrus
nTPM: 27.2
2557 Male, age 75, right hemisphere 27.2
Precentral gyrus, dorsal
nTPM: 32.3
2354 Female, age 67, right hemisphere 34.8
2476 Female, age 94, right hemisphere 33.8
1756 Male, age 74, left hemisphere 32.1
2442 Male, age 75, left hemisphere 28.5
Precentral gyrus, middle
nTPM: 35.5
1969 Female, age 67, right hemisphere 46.1
1909 Male, age 61, left hemisphere 38.3
2475 Male, age 74, right hemisphere 32.0
2549 Female, age 94, right hemisphere 30.8
2443 Male, age 75, left hemisphere 30.2
Precentral gyrus, ventral
nTPM: 32.3
2662 Female, age 67, right hemisphere 35.6
2678 Male, age 74, left hemisphere 35.0
2550 Female, age 94, right hemisphere 29.9
2630 Male, age 75, left hemisphere 28.8
Precuneus
nTPM: 30.4
2467 Male, age 75, right hemisphere 32.7
1780 Female, age 91, right hemisphere 31.6
1782 Male, age 76, right hemisphere 31.2
2673 Female, age 94, right hemisphere 29.8
2510 Female, age 67, right hemisphere 28.9
2594 Male, age 61, left hemisphere 28.3
Premotor cortex, dorsal
nTPM: 32.2
1878 Female, age 85, right hemisphere 38.9
2027 Male, age 61, left hemisphere 36.7
2554 Female, age 67, right hemisphere 29.5
2536 Male, age 75, left hemisphere 28.2
2631 Male, age 74, left hemisphere 27.7
Premotor cortex, ventral
nTPM: 34.4
1777 Female, age 67, left hemisphere 44.0
1881 Female, age 85, right hemisphere 37.7
1779 Male, age 61, left hemisphere 36.0
2349 Male, age 75, left hemisphere 32.8
2637 Female, age 94, right hemisphere 32.1
1757 Male, age 74, left hemisphere 24.1
Retrosplenial cortex
nTPM: 36.8
1951 Male, age 61, right hemisphere 42.2
1914 Male, age 76, right hemisphere 37.0
2675 Female, age 94, left hemisphere 31.1
Subcentral gyrus, S2
nTPM: 32.9
2072 Male, age 61, left hemisphere 35.6
2839 Female, age 94, right hemisphere 35.5
2762 Male, age 74, left hemisphere 34.5
1964 Female, age 85, right hemisphere 33.9
2351 Male, age 75, left hemisphere 31.1
2555 Female, age 67, right hemisphere 26.7
Superior parietal lobule
nTPM: 31.4
1992 Female, age 91, right hemisphere 32.9
1800 Male, age 76, right hemisphere 32.8
2229 Male, age 61, right hemisphere 32.2
2672 Female, age 94, right hemisphere 30.4
2605 Female, age 67, right hemisphere 28.5
Superior temporal gyrus
nTPM: 36.2
1844 Female, age 91, left hemisphere 43.8
2615 Female, age 94, left hemisphere 38.4
1843 Male, age 76, left hemisphere 36.6
2025 Male, age 80, right hemisphere 33.9
2687 Male, age 75, right hemisphere 28.2
Supplementary motor cortex
nTPM: 31.2
1993 Male, age 61, left hemisphere 37.5
2537 Male, age 75, left hemisphere 32.9
2548 Female, age 94, right hemisphere 28.8
2632 Male, age 74, left hemisphere 25.8
Supramarginal gyrus
nTPM: 33.5
1991 Female, age 91, right hemisphere 37.9
2415 Male, age 61, left hemisphere 34.0
2513 Female, age 72, left hemisphere 33.4
1798 Male, age 76, right hemisphere 32.2
2601 Female, age 94, left hemisphere 29.8
Temporal pole
nTPM: 40.8
1832 Female, age 91, left hemisphere 56.1
1853 Female, age 85, right hemisphere 42.3
2518 Male, age 75, right hemisphere 38.2
1826 Male, age 76, right hemisphere 33.8
2612 Female, age 94, left hemisphere 33.5
Temporo-insular cortex, parainsular gyrus
nTPM: 30.5
1802 Male, age 76, left hemisphere 35.9
2598 Male, age 75, left hemisphere 31.9
2264 Female, age 91, right hemisphere 29.8
2416 Male, age 61, right hemisphere 29.6
2512 Female, age 67, right hemisphere 28.0
2676 Female, age 94, right hemisphere 27.7
Temporo-occipital transitional zone
nTPM: 37.3
1793 Male, age 80, right hemisphere 43.4
1900 Male, age 76, left hemisphere 40.4
2251 Female, age 85, right hemisphere 27.9
Transversal temporal gyrus, anterior
nTPM: 38.1
1888 Female, age 91, left hemisphere 46.1
1910 Male, age 80, right hemisphere 41.9
2522 Female, age 94, left hemisphere 41.3
1809 Male, age 76, right hemisphere 32.6
2610 Male, age 75, right hemisphere 28.6
Transversal temporal gyrus, posterior
nTPM: 34.6
2833 Male, age 80, right hemisphere 41.3
1967 Female, age 91, right hemisphere 36.4
1922 Male, age 76, left hemisphere 34.8
2614 Female, age 94, left hemisphere 33.1
2520 Male, age 75, right hemisphere 27.4

CEREBRAL CORTEX - HPA PFC Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.1
Sample id Sample description nTPM
Anterior cingulate gyrus, pregenual-dorsal
nTPM: 14.3
1511 Male, age 61, right hemisphere 19.7
1516 Female, age 85, left hemisphere 19.3
1510 Male, age 61, left hemisphere 18.2
1515 Female, age 94, right hemisphere 15.5
1512 Male, age 75, left hemisphere 13.1
1517 Female, age 67, left hemisphere 12.3
1513 Male, age 74, left hemisphere 11.5
1518 Female, age 67, right hemisphere 11.2
1514 Male, age 74, right hemisphere 7.9
Anterior cingulate gyrus, pregenual-ventral
nTPM: 13.7
1519 Male, age 61, left hemisphere 18.4
1520 Male, age 75, right hemisphere 14.6
1523 Female, age 67, left hemisphere 13.2
1522 Male, age 74, right hemisphere 11.2
1521 Male, age 74, left hemisphere 11.1
Anterior cingulate gyrus, subgenual
nTPM: 14.6
1529 Female, age 85, left hemisphere 21.5
1524 Male, age 61, left hemisphere 19.0
1530 Female, age 67, right hemisphere 14.2
1526 Male, age 75, right hemisphere 13.3
1525 Male, age 75, left hemisphere 12.4
1528 Male, age 74, right hemisphere 11.5
1527 Male, age 74, left hemisphere 10.0
Dorsolateral prefrontal cortex
nTPM: 16.2
1449 Female, age 85, right hemisphere 23.9
1444 Male, age 75, left hemisphere 17.9
1448 Female, age 94, right hemisphere 16.6
1445 Male, age 75, right hemisphere 15.6
1447 Female, age 94, left hemisphere 15.5
1450 Female, age 67, right hemisphere 13.1
1446 Male, age 74, right hemisphere 10.9
Dorsomedial prefrontal cortex
nTPM: 16.6
1439 Male, age 61, left hemisphere 24.8
1440 Male, age 61, right hemisphere 22.0
1443 Female, age 67, right hemisphere 14.1
1441 Male, age 75, left hemisphere 13.4
1442 Male, age 75, right hemisphere 9.0
Frontal cortex
nTPM: 20.9
1581 Female, age 85, right hemisphere 33.1
1580 Female, age 85, left hemisphere 26.2
1573 Male, age 61, right hemisphere 25.3
1579 Female, age 94, right hemisphere 22.0
1578 Female, age 94, left hemisphere 21.5
1572 Male, age 61, left hemisphere 20.7
1577 Male, age 74, right hemisphere 17.9
1576 Male, age 74, left hemisphere 17.2
1582 Female, age 67, left hemisphere 17.0
1583 Female, age 67, right hemisphere 16.8
1575 Male, age 75, right hemisphere 16.6
1574 Male, age 75, left hemisphere 15.9
Frontomarginal cortex
nTPM: 19.6
1471 Female, age 85, left hemisphere 39.3
1465 Male, age 61, left hemisphere 25.6
1466 Male, age 61, right hemisphere 25.6
1467 Male, age 75, right hemisphere 17.8
1470 Female, age 94, right hemisphere 16.9
1469 Female, age 94, left hemisphere 14.0
1473 Female, age 67, right hemisphere 13.9
1468 Male, age 74, left hemisphere 11.8
1472 Female, age 67, left hemisphere 11.6
Frontopolar cortex
nTPM: 19.3
1459 Male, age 61, right hemisphere 27.8
1458 Male, age 61, left hemisphere 23.2
1461 Male, age 75, right hemisphere 19.4
1462 Female, age 94, left hemisphere 18.1
1464 Female, age 67, right hemisphere 16.8
1460 Male, age 75, left hemisphere 16.4
1463 Female, age 67, left hemisphere 13.2
Gyrus rectus
nTPM: 21.5
1475 Male, age 61, right hemisphere 28.2
1474 Male, age 61, left hemisphere 27.5
1480 Female, age 85, left hemisphere 24.9
1479 Female, age 94, right hemisphere 20.5
1481 Female, age 67, left hemisphere 19.9
1478 Female, age 94, left hemisphere 17.1
1476 Male, age 75, left hemisphere 17.0
1477 Male, age 75, right hemisphere 16.5
Inferior frontal gyrus, orbital
nTPM: 16.8
1501 Male, age 61, right hemisphere 26.3
1508 Female, age 85, right hemisphere 25.2
1500 Male, age 61, left hemisphere 23.7
1507 Female, age 85, left hemisphere 16.3
1502 Male, age 75, left hemisphere 14.6
1509 Female, age 67, right hemisphere 13.4
1503 Male, age 75, right hemisphere 13.2
1506 Female, age 94, left hemisphere 13.0
1504 Male, age 74, left hemisphere 12.0
1505 Male, age 74, right hemisphere 10.5
Inferior frontal gyrus, triangular
nTPM: 16.7
1543 Male, age 61, right hemisphere 26.0
1548 Female, age 85, right hemisphere 24.8
1542 Male, age 61, left hemisphere 21.4
1549 Female, age 67, left hemisphere 14.5
1547 Female, age 85, left hemisphere 14.0
1546 Female, age 94, right hemisphere 13.5
1544 Male, age 75, right hemisphere 10.3
1545 Male, age 74, right hemisphere 8.8
Orbitofrontal gyrus, lateral
nTPM: 15.9
1493 Male, age 61, right hemisphere 23.0
1498 Female, age 85, right hemisphere 17.9
1496 Female, age 94, right hemisphere 15.2
1495 Female, age 94, left hemisphere 14.8
1499 Female, age 67, right hemisphere 13.7
1494 Male, age 75, left hemisphere 13.5
1497 Female, age 85, left hemisphere 12.9
Orbitofrontal gyrus, medial
nTPM: 20.5
1490 Female, age 85, right hemisphere 26.6
1482 Male, age 61, left hemisphere 25.7
1487 Female, age 94, left hemisphere 24.1
1488 Female, age 94, right hemisphere 23.1
1489 Female, age 85, left hemisphere 22.3
1484 Male, age 75, right hemisphere 20.6
1483 Male, age 75, left hemisphere 18.7
1485 Male, age 74, left hemisphere 16.9
1492 Female, age 67, right hemisphere 16.9
1486 Male, age 74, right hemisphere 16.8
1491 Female, age 67, left hemisphere 14.1
Orbitofrontal gyrus, posterior
nTPM: 17.3
1531 Male, age 61, left hemisphere 24.7
1539 Female, age 85, right hemisphere 23.0
1532 Male, age 61, right hemisphere 22.6
1538 Female, age 85, left hemisphere 20.2
1536 Female, age 94, left hemisphere 19.2
1533 Male, age 75, left hemisphere 16.1
1540 Female, age 67, left hemisphere 13.9
1541 Female, age 67, right hemisphere 13.7
1537 Female, age 94, right hemisphere 13.1
1534 Male, age 75, right hemisphere 12.3
1535 Male, age 74, left hemisphere 11.8
Subcallosal gyrus
nTPM: 23.1
1550 Male, age 61, left hemisphere 32.4
1558 Female, age 85, left hemisphere 31.7
1559 Female, age 85, right hemisphere 30.0
1556 Female, age 94, left hemisphere 29.2
1551 Male, age 61, right hemisphere 25.3
1557 Female, age 94, right hemisphere 24.9
1555 Male, age 74, right hemisphere 19.5
1560 Female, age 67, left hemisphere 18.6
1561 Female, age 67, right hemisphere 18.6
1553 Male, age 75, right hemisphere 16.8
1552 Male, age 75, left hemisphere 16.1
1554 Male, age 74, left hemisphere 14.0
Superior frontal gyrus
nTPM: 22.2
1569 Female, age 85, left hemisphere 32.6
1562 Male, age 61, left hemisphere 29.3
1570 Female, age 85, right hemisphere 27.2
1563 Male, age 61, right hemisphere 26.7
1568 Female, age 94, right hemisphere 21.6
1567 Female, age 94, left hemisphere 19.1
1565 Male, age 75, right hemisphere 18.0
1564 Male, age 75, left hemisphere 16.4
1566 Male, age 74, right hemisphere 16.0
1571 Female, age 67, right hemisphere 14.8
Temporal cortex
nTPM: 20.8
1590 Male, age 61, right hemisphere 27.1
1596 Female, age 85, right hemisphere 26.7
1594 Female, age 94, left hemisphere 22.6
1595 Female, age 94, right hemisphere 20.2
1591 Male, age 75, right hemisphere 19.3
1593 Male, age 74, right hemisphere 17.8
1592 Male, age 74, left hemisphere 12.0
Ventrolateral prefrontal cortex
nTPM: 15.5
1455 Female, age 85, right hemisphere 24.6
1451 Male, age 75, right hemisphere 16.4
1456 Female, age 67, left hemisphere 15.1
1457 Female, age 67, right hemisphere 14.9
1454 Female, age 94, left hemisphere 13.8
1452 Male, age 74, left hemisphere 12.9
1453 Male, age 74, right hemisphere 11.0
Ventromedial prefrontal cortex
nTPM: 20.6
1433 Male, age 61, right hemisphere 26.2
1432 Male, age 61, left hemisphere 25.8
1436 Female, age 85, left hemisphere 24.2
1437 Female, age 85, right hemisphere 21.5
1435 Female, age 94, right hemisphere 18.0
1434 Male, age 75, right hemisphere 15.7
1438 Female, age 67, left hemisphere 12.7

CEREBRAL CORTEX - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Occipital cortex
Scaled Tags Per Million: 79.2
FF:10163-103B1 76 years, female 79.2
Postcentral gyrus
Scaled Tags Per Million: 129.5
FF:10032-101E5 44-52 years, mixed 129.5
Frontal lobe
Scaled Tags Per Million: 118.7
FF:10040-101F4 32-61 years, mixed 118.7
Insula
Scaled Tags Per Million: 129.4
FF:10039-101F3 20-68 years, mixed 129.4
Medial frontal gyrus
Scaled Tags Per Million: 88.1
FF:10150-102I6 76 years, female 88.1
Medial temporal gyrus
Scaled Tags Per Million: 94.1
FF:10183-103D3 60 years, female 110.0
FF:10156-103A3 76 years, female 78.3
Occipital lobe
Scaled Tags Per Million: 119.6
FF:10076-102A4 27 years, male 119.6
Occipital pole
Scaled Tags Per Million: 125.0
FF:10036-101E9 22-68 years, mixed 125.0
Paracentral gyrus
Scaled Tags Per Million: 125.1
FF:10035-101E8 22-69 years, mixed 125.1
Parietal lobe
Scaled Tags Per Million: 91.1
FF:10034-101E7 35-89 years, mixed 113.0
FF:10157-103A4 76 years, female 86.0
FF:10171-103B9 60 years, female 74.3
Temporal lobe
Scaled Tags Per Million: 116.6
FF:10031-101E4 32-61 years, mixed 116.6

CEREBRAL CORTEX - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.8
Pig sample Sample description nTPM
Occipital cortex
nTPM: 85.9
Samples: 4

Max nTPM: 95.8
Min nTPM: 72.2
Sample A Female 87.6
Sample B Female 88.0
Sample C Male 95.8
Sample D Male 72.2
Retrosplenial cortex
nTPM: 69.0
Samples: 4

Max nTPM: 76.6
Min nTPM: 60.9
Sample A Female 75.2
Sample B Female 60.9
Sample C Male 76.6
Sample D Male 63.3
Cingulate cortex
nTPM: 72.9
Samples: 4

Max nTPM: 90.2
Min nTPM: 61.4
Sample A Female 90.2
Sample B Female 61.4
Sample C Male 75.8
Sample D Male 64.1
Insular cortex
nTPM: 65.7
Samples: 4

Max nTPM: 89.6
Min nTPM: 54.0
Sample A Female 89.6
Sample B Female 54.0
Sample C Male 63.8
Sample D Male 55.5
Motor cortex
nTPM: 81.2
Samples: 4

Max nTPM: 97.1
Min nTPM: 63.9
Sample A Female 97.1
Sample B Female 69.4
Sample C Male 94.2
Sample D Male 63.9
Prefrontal cortex
nTPM: 80.4
Samples: 4

Max nTPM: 101.1
Min nTPM: 68.3
Sample A Female 101.1
Sample B Female 78.3
Sample C Male 73.8
Sample D Male 68.3
Somatosensory cortex
nTPM: 86.7
Samples: 3

Max nTPM: 89.5
Min nTPM: 82.4
Sample B Female 82.4
Sample C Male 88.3
Sample D Male 89.5
Temporal cortex
nTPM: 74.7
Samples: 4

Max nTPM: 77.4
Min nTPM: 70.9
Sample A Female 77.1
Sample B Female 70.9
Sample C Male 77.4
Sample D Male 73.3

CEREBRAL CORTEX - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.5
Mouse sample Sample description nTPM
Occipital cortex
nTPM: 88.3
Samples: 4

Max nTPM: 91.9
Min nTPM: 81.4
Sample A Male 89.3
Sample B Male 90.5
Sample C Female 91.9
Sample D Female 81.4
Frontal cortex
nTPM: 88.1
Samples: 4

Max nTPM: 94.2
Min nTPM: 82.2
Sample A Male 94.2
Sample B Male 90.5
Sample C Female 85.3
Sample D Female 82.2
Retrosplenial and cingulate cortex
nTPM: 84.7
Samples: 4

Max nTPM: 90.6
Min nTPM: 79.3
Sample A Male 90.6
Sample B Male 86.0
Sample C Female 82.8
Sample D Female 79.3
Somatosensory cortex
nTPM: 93.5
Samples: 4

Max nTPM: 101.3
Min nTPM: 85.0
Sample A Male 100.1
Sample B Male 101.3
Sample C Female 85.0
Sample D Female 87.7

CEREBRAL CORTEX - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Cerebral cortex
Expression energy: 9.7
70565153 Antisense, RP_050623_04_D02, Mouse strain C57BL/6J (56 days, male) 11.0
74988626 Antisense, RP_060315_05_F10, Mouse strain C57BL/6J (56 days, male) 8.3

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