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  • SUMMARY

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  • STRUCT & INT

  • HLA-A
CANCER LIVER CANCER Show tissue menu
BREAST CANCER CARCINOID CERVICAL CANCER COLORECTAL CANCER ENDOMETRIAL CANCER GLIOMA HEAD AND NECK CANCER LIVER CANCER LUNG CANCER LYMPHOMA
MELANOMA OVARIAN CANCER PANCREATIC CANCER PROSTATE CANCER RENAL CANCER SKIN CANCER STOMACH CANCER TESTIS CANCER THYROID CANCER UROTHELIAL CANCER
LIHC TCGA LIHC VALIDATION PROTEIN LIHC CPTAC
Dictionary
Liver cancer
Human cancer
Liver hepatocellular carcinoma
LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

HLA-A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)


Stage:


Survival analysis
Current cut offi

Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.

:
Best expression cut offi

Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .

When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.

: 106.89
Median expressioni

Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.

: N/A
Median follow up timei

Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.

: N/A
P scorei

Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.

N/A
5-year survival highi

5-year survival for patients with higher expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
5-year survival lowi

5-year survival for patients with lower expression than the expression cutoff.

For melanoma and glioma, 3-year survival is shown.

N/A
TCGA RNA samplesi

RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.

Average pTPM 238.2
Number of samples 362
Samples
Sample Description pTPM
TCGA-3K-AAZ8-01A 65 years, male, black or african american, stage:Stage IIIB, alive, 396 days 2486.7
TCGA-2Y-A9H2-01A 64 years, female, white, stage:Stage I, alive, 1731 days 2448.3
TCGA-DD-A114-01A 42 years, male, black or african american, stage:Stage II, dead, 1149 days 2129.7
TCGA-BC-A8YO-01A 66 years, female, white, stage:Stage IIIC, alive, 562 days 1965.4
TCGA-CC-A1HT-01A 50 years, male, asian, stage:Stage IIIA, dead, 101 days 1887.6
TCGA-UB-A7MD-01A 67 years, male, black or african american, stage:Stage I, dead, 52 days 1631.2
TCGA-G3-AAV4-01A 83 years, female, white, stage:Stage I, dead, 27 days 1557.9
TCGA-XR-A8TG-01A 58 years, male, white, stage:Stage I, alive, 898 days 1542.0
TCGA-DD-A4NA-01A 67 years, female, white, stage:Stage IIIC, alive, 1008 days 1451.4
TCGA-GJ-A3OU-01A 59 years, male, white, stage:Stage I, alive, 879 days 1340.0
TCGA-EP-A12J-01A 62 years, male, black or african american, stage:Stage I, alive, 570 days 1292.4
TCGA-G3-A3CG-01A 80 years, male, white, stage:Stage I, alive, 673 days 1154.0
TCGA-BC-A10Q-01A 72 years, female, white, stage:'--, dead, 1135 days 1152.0
TCGA-5R-AA1C-01A 57 years, male, white, stage:Stage II, alive, 520 days 1081.6
TCGA-DD-A4NQ-01A 60 years, male, white, stage:Stage II, dead, 373 days 993.4
TCGA-ES-A2HT-01A 54 years, male, black or african american, stage:Stage I, dead, 438 days 972.4
TCGA-2Y-A9H0-01A 49 years, male, white, stage:Stage IIIA, alive, 3675 days 933.9
TCGA-5C-A9VH-01A 70 years, male, white, stage:Stage I, alive, 322 days 916.7
TCGA-CC-5264-01A 71 years, male, asian, stage:Stage IIIA, dead, 102 days 891.6
TCGA-BC-A3KF-01A 66 years, female, white, stage:Stage I, alive, 8 days 888.0
TCGA-WX-AA44-01A 64 years, female, white, stage:Stage I, alive, 615 days 840.1
TCGA-G3-A5SL-01A 70 years, male, white, stage:Stage II, alive, 621 days 828.7
TCGA-ZS-A9CF-01A 64 years, male, white, stage:Stage II, alive, 2412 days 763.7
TCGA-DD-AACT-01A 69 years, female, asian, stage:Stage I, alive, 1562 days 757.4
TCGA-DD-A4NR-01A 85 years, female, white, stage:Stage I, dead, 9 days 750.7
TCGA-BC-A10Y-01A 76 years, male, white, stage:'--, dead, 711 days 747.8
TCGA-ZS-A9CD-01A 73 years, male, white, stage:Stage II, dead, 1386 days 731.8
TCGA-DD-A4NJ-01A 54 years, female, white, stage:Stage II, alive, 928 days 721.9
TCGA-4R-AA8I-01A 66 years, male, white, stage:Stage II, dead, 262 days 720.3
TCGA-DD-AACU-01A 59 years, male, asian, stage:Stage I, alive, 1567 days 716.5
TCGA-ED-A82E-01A 60 years, female, asian, stage:Stage IIIA, alive, 408 days 611.7
TCGA-DD-AACB-01A 74 years, female, asian, stage:Stage I, alive, 2324 days 588.1
TCGA-BC-A3KG-01A 68 years, female, white, stage:Stage II, alive, 680 days 587.5
TCGA-T1-A6J8-01A 68 years, male, white, stage:'--, alive, 23 days 587.3
TCGA-EP-A2KC-01A 62 years, male, black or african american, stage:Stage I, dead, 19 days 586.4
TCGA-G3-A25V-01A 68 years, male, white, stage:Stage I, alive, 860 days 583.3
TCGA-BC-A10S-01A 81 years, male, white, stage:'--, dead, 1423 days 580.1
TCGA-DD-AAE0-01A 45 years, female, asian, stage:Stage IIIA, alive, 555 days 573.5
TCGA-KR-A7K8-01A 57 years, male, stage:Stage I, alive, 906 days 569.9
TCGA-RC-A7SK-01A 59 years, male, asian, stage:Stage I, alive, 472 days 562.7
TCGA-G3-A25T-01A 45 years, female, white, stage:Stage IIIA, alive, 1553 days 561.8
TCGA-DD-A39V-01A 77 years, male, white, stage:Stage II, dead, 643 days 559.6
TCGA-ED-A97K-01A 54 years, male, asian, stage:Stage IIIA, alive, 6 days 558.8
TCGA-DD-AAD0-01A 73 years, female, asian, stage:Stage I, alive, 137 days 548.3
TCGA-DD-A39X-01A 78 years, female, white, stage:Stage I, dead, 1694 days 528.5
TCGA-RC-A6M6-01A 75 years, male, white, stage:Stage II, alive, 9 days 524.6
TCGA-2Y-A9H9-01A 70 years, male, white, stage:Stage I, alive, 697 days 490.7
TCGA-FV-A3R2-01A 75 years, male, white, stage:Stage I, dead, 194 days 469.8
TCGA-G3-A25X-01A 73 years, male, asian, stage:Stage II, alive, 1779 days 466.3
TCGA-FV-A495-01A 51 years, female, white, stage:Stage II, alive, 1 days 463.1
TCGA-GJ-A9DB-01A 68 years, male, white, stage:Stage I, dead, 67 days 460.9
TCGA-DD-A11D-01A 57 years, female, white, stage:Stage I, dead, 1560 days 445.3
TCGA-DD-AADQ-01A 59 years, male, asian, stage:Stage II, alive, 436 days 444.6
TCGA-BC-A112-01A 80 years, male, white, stage:'--, dead, 153 days 442.1
TCGA-2Y-A9H8-01A 85 years, female, white, stage:'--, dead, 633 days 423.4
TCGA-DD-A4NS-01A 61 years, female, white, stage:Stage I, dead, 2456 days 411.2
TCGA-CC-A7IJ-01A 56 years, male, asian, stage:Stage II, alive, 382 days 402.9
TCGA-WQ-AB4B-01A 62 years, male, white, stage:Stage II, alive, 395 days 401.1
TCGA-2Y-A9H5-01A 59 years, female, white, stage:Stage I, dead, 555 days 399.3
TCGA-CC-A3MA-01A 61 years, male, asian, stage:Stage IIIA, dead, 303 days 398.4
TCGA-G3-AAV7-01A 38 years, male, asian, stage:Stage II, alive, 361 days 396.0
TCGA-DD-AACL-01A 66 years, female, asian, stage:Stage I, dead, 107 days 395.2
TCGA-MI-A75H-01A 77 years, male, white, stage:'--, alive, 747 days 394.0
TCGA-NI-A4U2-01A 71 years, male, white, stage:Stage IIIA, dead, 1791 days 392.3
TCGA-DD-A1EI-01A 46 years, male, asian, stage:Stage I, alive, 183 days 391.7
TCGA-2Y-A9H1-01A 58 years, male, white, stage:Stage I, dead, 1229 days 388.8
TCGA-DD-A4NP-01A 32 years, male, white, stage:Stage I, alive, 3308 days 385.7
TCGA-DD-A3A8-01A 75 years, male, white, stage:Stage II, dead, 11 days 384.8
TCGA-ZP-A9D1-01A 56 years, female, white, stage:'--, alive, 21 days 384.4
TCGA-G3-AAV2-01A 50 years, male, white, stage:Stage I, alive, 372 days 380.4
TCGA-FV-A4ZP-01A 78 years, male, white, stage:Stage IIIA, dead, 2486 days 371.6
TCGA-O8-A75V-01A 54 years, male, stage:Stage I, alive, 538 days 368.0
TCGA-DD-A3A5-01A 66 years, female, white, stage:Stage III, dead, 3125 days 367.5
TCGA-G3-A5SM-01A 58 years, male, white, stage:Stage II, alive, 520 days 366.8
TCGA-CC-5259-01A 60 years, female, asian, stage:Stage IIIC, alive, 250 days 365.9
TCGA-DD-A4ND-01A 56 years, female, white, stage:Stage I, alive, 2746 days 359.5
TCGA-UB-AA0V-01A 69 years, female, white, stage:Stage I, alive, 314 days 350.7
TCGA-DD-AAD3-01A 43 years, male, asian, stage:Stage I, alive, 1295 days 343.3
TCGA-XR-A8TC-01A 43 years, female, white, stage:Stage I, alive, 1339 days 339.6
TCGA-ZP-A9CZ-01A 72 years, male, asian, stage:'--, alive, 706 days 335.9
TCGA-DD-A73B-01A 72 years, female, white, stage:Stage I, dead, 283 days 335.4
TCGA-5R-AA1D-01A 17 years, female, white, stage:Stage IIIA, alive, 449 days 333.3
TCGA-G3-AAV5-01A 67 years, male, white, stage:Stage II, alive, 354 days 332.3
TCGA-FV-A3R3-01A 38 years, female, white, stage:Stage I, dead, 366 days 327.0
TCGA-G3-AAV6-01A 53 years, female, white, stage:Stage IIIA, dead, 65 days 323.9
TCGA-G3-A3CH-01A 53 years, male, asian, stage:Stage IIIA, alive, 780 days 320.0
TCGA-BC-A5W4-01A 69 years, male, white, stage:Stage IIIA, dead, 547 days 319.9
TCGA-DD-A1EC-01A 20 years, female, white, stage:Stage I, alive, 602 days 318.5
TCGA-DD-AAVY-01A 56 years, male, asian, stage:Stage IIIA, alive, 1970 days 318.2
TCGA-DD-A73A-01A 71 years, male, white, stage:Stage I, alive, 728 days 316.6
TCGA-DD-A39Z-01A 43 years, female, stage:Stage II, dead, 601 days 314.4
TCGA-FV-A2QQ-01A 80 years, male, white, stage:Stage I, alive, 729 days 313.1
TCGA-DD-A1EG-01A 76 years, male, white, stage:Stage I, dead, 1372 days 312.1
TCGA-G3-A25Z-01A 58 years, male, asian, stage:Stage I, alive, 655 days 307.2
TCGA-ED-A5KG-01A 60 years, female, asian, stage:Stage II, alive, 854 days 306.7
TCGA-DD-AAE9-01A 69 years, male, asian, stage:Stage I, alive, 722 days 299.5
TCGA-CC-5261-01A 44 years, male, asian, stage:Stage II, dead, 97 days 287.4
TCGA-ED-A459-01A 47 years, male, asian, stage:Stage II, alive, 910 days 283.7
TCGA-DD-AAVV-01A 56 years, male, asian, stage:Stage II, alive, 2455 days 281.4
TCGA-BC-A216-01A 62 years, female, white, stage:Stage IIIA, alive, 1351 days 280.2
TCGA-2Y-A9HB-01A 66 years, male, stage:Stage I, alive, 260 days 279.3
TCGA-BC-A110-01A 51 years, female, black or african american, stage:'--, dead, 2116 days 278.4
TCGA-CC-A7IG-01A 47 years, male, asian, stage:Stage II, dead, 299 days 262.7
TCGA-G3-A5SK-01A 58 years, male, white, stage:Stage I, alive, 744 days 259.7
TCGA-G3-A3CI-01A 71 years, male, white, stage:Stage I, alive, 180 days 257.2
TCGA-DD-A1EK-01A 64 years, female, white, stage:Stage IVB, dead, 558 days 252.8
TCGA-DD-A3A9-01A 64 years, female, white, stage:Stage IVB, dead, 931 days 251.6
TCGA-G3-A6UC-01A 65 years, male, white, stage:Stage IIIB, alive, 671 days 246.3
TCGA-DD-AAVX-01A 38 years, male, asian, stage:Stage II, alive, 1718 days 246.2
TCGA-2Y-A9GT-01A 51 years, male, white, stage:Stage I, dead, 1624 days 244.7
TCGA-DD-AAW2-01A 69 years, male, asian, stage:Stage I, alive, 1855 days 242.9
TCGA-DD-AAD2-01A 66 years, male, asian, stage:Stage I, alive, 658 days 242.1
TCGA-DD-AAVW-01A 35 years, male, asian, stage:Stage I, alive, 2317 days 240.1
TCGA-LG-A9QC-01A 48 years, male, white, stage:Stage I, alive, 425 days 239.5
TCGA-DD-A39Y-01A 67 years, male, asian, stage:Stage I, dead, 171 days 237.7
TCGA-CC-A3M9-01A 45 years, male, asian, stage:Stage IIIA, dead, 300 days 232.0
TCGA-YA-A8S7-01A 68 years, male, white, stage:Stage IIIA, dead, 412 days 229.9
TCGA-G3-A7M5-01A 76 years, male, asian, stage:Stage I, alive, 447 days 229.5
TCGA-DD-AACC-01A 61 years, male, asian, stage:Stage I, dead, 1685 days 228.2
TCGA-ZP-A9D4-01A 64 years, female, white, stage:'--, alive, 395 days 226.3
TCGA-DD-AADA-01A 66 years, female, asian, stage:Stage I, alive, 1233 days 224.9
TCGA-DD-A119-01A 40 years, male, asian, stage:Stage IV, dead, 223 days 224.8
TCGA-DD-AACX-01A 66 years, male, asian, stage:Stage II, alive, 170 days 210.0
TCGA-DD-AAW3-01A 69 years, male, asian, stage:Stage I, alive, 1633 days 209.1
TCGA-DD-AACD-01A 48 years, male, asian, stage:Stage I, dead, 381 days 208.0
TCGA-BC-A10W-01A 50 years, male, asian, stage:'--, dead, 91 days 202.1
TCGA-ED-A627-01A 74 years, male, white, stage:Stage I, alive, 423 days 199.9
TCGA-DD-A1EB-01A 72 years, female, stage:Stage I, alive, 2017 days 199.3
TCGA-DD-A1EA-01A 68 years, male, asian, stage:Stage II, alive, 2415 days 193.3
TCGA-2Y-A9GU-01A 55 years, female, white, stage:Stage I, alive, 1939 days 188.2
TCGA-MI-A75I-01A 61 years, male, black or african american, stage:'--, alive, 630 days 187.7
TCGA-DD-A73F-01A 77 years, female, white, stage:Stage I, alive, 1085 days 183.7
TCGA-ED-A66X-01A 35 years, male, asian, stage:Stage IIIA, alive, 406 days 177.7
TCGA-DD-AAE2-01A 51 years, male, asian, stage:Stage I, alive, 638 days 177.4
TCGA-UB-A7ME-01A 51 years, male, asian, stage:Stage I, alive, 486 days 174.1
TCGA-DD-AAEA-01A 65 years, male, asian, stage:Stage I, alive, 575 days 173.5
TCGA-ZP-A9D2-01A 51 years, male, white, stage:'--, dead, 765 days 171.6
TCGA-K7-A5RF-01A 64 years, male, white, stage:Stage I, alive, 631 days 171.4
TCGA-UB-A7MB-01A 24 years, male, white, stage:Stage II, alive, 601 days 171.3
TCGA-CC-A5UC-01A 63 years, male, asian, stage:Stage IIIA, dead, 347 days 170.9
TCGA-DD-A4NG-01A 77 years, male, white, stage:Stage IIIA, dead, 802 days 170.6
TCGA-RG-A7D4-01A 69 years, male, black or african american, stage:Stage II, alive, 1098 days 170.3
TCGA-DD-AADP-01A 45 years, male, asian, stage:Stage I, alive, 458 days 170.2
TCGA-RC-A6M4-01A 74 years, female, white, stage:Stage IIIA, alive, 22 days 169.9
TCGA-NI-A8LF-01A 74 years, male, white, stage:Stage I, alive, 799 days 168.6
TCGA-EP-A3JL-01A 76 years, male, white, stage:Stage I, alive, 303 days 168.4
TCGA-DD-A4NN-01A 56 years, female, white, stage:Stage I, dead, 899 days 165.1
TCGA-G3-A25Y-01A 52 years, female, asian, stage:Stage I, dead, 452 days 159.7
TCGA-BC-A69I-01A 69 years, male, white, stage:Stage I, alive, 387 days 159.2
TCGA-DD-AA3A-01A 81 years, female, white, stage:Stage I, dead, 410 days 157.9
TCGA-DD-A4NK-01A 80 years, female, white, stage:Stage IIIA, dead, 1210 days 157.9
TCGA-LG-A6GG-01A 79 years, female, white, stage:Stage II, alive, 387 days 153.5
TCGA-UB-A7MA-01A 62 years, female, white, stage:Stage II, alive, 848 days 151.1
TCGA-2Y-A9H3-01A 45 years, male, white, stage:Stage II, alive, 1516 days 147.7
TCGA-DD-AADB-01A 51 years, male, asian, stage:Stage I, alive, 1242 days 147.1
TCGA-ZP-A9CY-01A 66 years, female, white, stage:'--, alive, 782 days 146.8
TCGA-2Y-A9H6-01A 68 years, female, white, stage:Stage I, alive, 357 days 146.3
TCGA-DD-A1EJ-01A 71 years, female, white, stage:Stage IIIC, dead, 1005 days 145.2
TCGA-DD-AAD5-01A 54 years, male, asian, stage:Stage I, alive, 1345 days 136.9
TCGA-CC-A5UE-01A 48 years, male, asian, stage:Stage IIIB, dead, 272 days 135.8
TCGA-ZP-A9CV-01A 59 years, male, white, stage:'--, dead, 1088 days 135.4
TCGA-DD-AACQ-01A 50 years, male, asian, stage:Stage II, dead, 432 days 134.1
TCGA-DD-AAEK-01A 51 years, male, asian, stage:Stage II, alive, 1067 days 132.3
TCGA-WQ-A9G7-01A 71 years, female, white, stage:'--, alive, 30 days 130.4
TCGA-DD-AADM-01A 58 years, male, asian, stage:Stage II, dead, 12 days 129.7
TCGA-DD-A4NE-01A 75 years, female, white, stage:Stage IIIA, dead, 660 days 125.7
TCGA-DD-AACE-01A 62 years, male, asian, stage:Stage I, alive, 2184 days 122.1
TCGA-DD-AACK-01A 70 years, male, asian, stage:Stage I, alive, 9 days 121.5
TCGA-G3-A25S-01A 64 years, male, white, stage:Stage I, dead, 416 days 120.1
TCGA-ED-A8O6-01A 50 years, female, asian, stage:Stage IIIA, dead, 56 days 119.1
TCGA-DD-AAC8-01A 72 years, male, asian, stage:Stage I, dead, 16 days 118.9
TCGA-EP-A3RK-01A 73 years, male, white, stage:Stage IIIA, alive, 363 days 118.6
TCGA-DD-AAEI-01A 72 years, male, asian, stage:Stage I, alive, 1531 days 118.2
TCGA-DD-AACN-01A 32 years, male, asian, stage:Stage I, alive, 1302 days 116.5
TCGA-MI-A75C-01A 64 years, male, white, stage:Stage I, alive, 291 days 116.5
TCGA-DD-A4NB-01A 25 years, male, white, stage:Stage I, alive, 989 days 112.4
TCGA-CC-A7IE-01A 57 years, male, asian, stage:Stage IIIA, dead, 217 days 111.6
TCGA-FV-A2QR-01A 75 years, male, white, stage:Stage I, dead, 581 days 110.0
TCGA-ED-A7XP-01A 53 years, female, asian, stage:Stage II, alive, 400 days 110.0
TCGA-DD-AACZ-01A 63 years, female, asian, stage:Stage I, dead, 171 days 109.1
TCGA-DD-A4NH-01A 65 years, female, white, stage:Stage IIIB, alive, 917 days 109.1
TCGA-CC-5263-01A 35 years, male, asian, stage:Stage IIIA, dead, 129 days 108.9
TCGA-DD-AACA-01A 65 years, male, asian, stage:Stage I, alive, 2301 days 107.3
TCGA-CC-A3MB-01A 36 years, male, asian, stage:Stage IIIA, dead, 315 days 107.2
TCGA-DD-AAEG-01A 59 years, female, asian, stage:Stage I, alive, 719 days 106.6
TCGA-ED-A4XI-01A 58 years, male, asian, stage:Stage II, alive, 819 days 105.8
TCGA-DD-AADR-01A 58 years, male, asian, stage:Stage I, alive, 2028 days 104.8
TCGA-UB-A7MC-01A 59 years, male, white, stage:Stage IIIA, alive, 500 days 104.3
TCGA-G3-A3CJ-01A 52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days 100.2
TCGA-CC-A8HT-01A 74 years, male, asian, stage:Stage IIIA, dead, 140 days 100.1
TCGA-DD-AADF-01A 64 years, female, asian, stage:Stage I, dead, 115 days 99.8
TCGA-DD-AACS-01A 39 years, male, asian, stage:Stage I, alive, 1804 days 96.9
TCGA-DD-AADJ-01A 70 years, female, asian, stage:Stage I, alive, 1066 days 96.6
TCGA-BC-A10T-01A 76 years, male, white, stage:'--, dead, 837 days 93.8
TCGA-DD-AAW0-01A 54 years, male, asian, stage:Stage I, alive, 2015 days 93.6
TCGA-BC-A217-01A 75 years, female, white, stage:Stage II, dead, 1397 days 92.3
TCGA-DD-AAEH-01A 73 years, male, asian, stage:Stage I, alive, 784 days 91.8
TCGA-RC-A7S9-01A 47 years, female, asian, stage:Stage I, alive, 640 days 91.0
TCGA-DD-AAD1-01A 51 years, female, asian, stage:Stage I, alive, 564 days 90.1
TCGA-5C-AAPD-01A 61 years, male, asian, stage:Stage II, alive, 20 days 89.6
TCGA-DD-AACJ-01A 75 years, male, asian, stage:Stage II, alive, 2102 days 89.1
TCGA-DD-AAEE-01A 55 years, male, asian, stage:Stage I, alive, 810 days 88.8
TCGA-DD-AACY-01A 61 years, male, asian, stage:Stage I, alive, 1450 days 87.6
TCGA-G3-AAV1-01A 51 years, male, asian, stage:Stage IIIC, dead, 359 days 86.3
TCGA-DD-AADK-01A 68 years, female, asian, stage:Stage II, alive, 1049 days 85.9
TCGA-CC-A8HV-01A 51 years, female, asian, stage:Stage II, dead, 279 days 83.8
TCGA-BD-A3EP-01A 75 years, female, black or african american, stage:Stage I, alive, 409 days 83.4
TCGA-DD-AAVP-01A 48 years, male, asian, stage:Stage I, alive, 2752 days 83.4
TCGA-CC-A9FW-01A 68 years, male, asian, stage:Stage IIIA, alive, 248 days 83.3
TCGA-DD-A73D-01A 68 years, female, white, stage:Stage II, alive, 693 days 83.3
TCGA-ZS-A9CG-01A 55 years, male, white, stage:Stage II, alive, 341 days 82.5
TCGA-WX-AA47-01A 33 years, female, white, stage:Stage IIIA, dead, 556 days 80.7
TCGA-G3-A7M8-01A 31 years, male, asian, stage:Stage I, alive, 430 days 80.2
TCGA-DD-A4NV-01A 61 years, male, white, stage:Stage IIIA, alive, 2398 days 78.2
TCGA-DD-AADS-01A 63 years, male, asian, stage:Stage I, alive, 474 days 77.9
TCGA-G3-AAUZ-01A 48 years, male, stage:Stage I, alive, 480 days 77.6
TCGA-CC-A7IH-01A 58 years, male, asian, stage:Stage IIIA, alive, 365 days 77.1
TCGA-2Y-A9H4-01A 68 years, male, black or african american, stage:Stage I, alive, 1452 days 75.4
TCGA-ED-A7PZ-01A 61 years, male, asian, stage:Stage II, alive, 6 days 75.1
TCGA-DD-AAE7-01A 72 years, male, asian, stage:Stage I, alive, 644 days 73.8
TCGA-HP-A5N0-01A 90 years, female, stage:'--, dead, 752 days 73.7
TCGA-CC-A8HU-01A 39 years, female, asian, stage:Stage IIIA, dead, 344 days 71.9
TCGA-G3-A25U-01A 63 years, female, asian, stage:Stage I, alive, 1636 days 69.4
TCGA-G3-A5SJ-01A 59 years, male, white, stage:Stage I, alive, 698 days 69.2
TCGA-G3-AAV0-01A 58 years, male, asian, stage:Stage I, alive, 476 days 68.7
TCGA-DD-AAD8-01A 73 years, female, asian, stage:Stage I, alive, 1219 days 67.5
TCGA-UB-AA0U-01A 60 years, male, white, stage:Stage II, alive, 327 days 67.3
TCGA-DD-A73E-01A 66 years, male, white, stage:Stage I, alive, 44 days 65.5
TCGA-DD-AADW-01A 48 years, male, asian, stage:Stage I, alive, 587 days 64.5
TCGA-G3-A7M9-01A 70 years, male, white, stage:Stage IIIB, dead, 56 days 64.1
TCGA-DD-A4NI-01A 67 years, male, white, stage:Stage II, alive, 816 days 60.1
TCGA-ED-A7XO-01A 29 years, male, asian, stage:Stage IIIA, alive, 427 days 59.7
TCGA-DD-AADC-01A 53 years, male, asian, stage:Stage I, dead, 425 days 58.6
TCGA-QA-A7B7-01A 48 years, male, black or african american, stage:Stage II, alive, 94 days 58.2
TCGA-DD-AADL-01A 58 years, male, asian, stage:Stage I, alive, 636 days 57.9
TCGA-G3-A5SI-01A 44 years, male, asian, stage:Stage II, dead, 768 days 56.3
TCGA-G3-AAV3-01A 58 years, female, white, stage:Stage II, alive, 412 days 54.4
TCGA-DD-AACW-01A 43 years, male, asian, stage:Stage I, alive, 1424 days 54.0
TCGA-DD-AAE3-01A 50 years, male, asian, stage:Stage I, alive, 566 days 53.6
TCGA-DD-A39W-01A 29 years, female, white, stage:Stage III, dead, 827 days 52.5
TCGA-RC-A7SB-01A 53 years, male, asian, stage:Stage II, alive, 588 days 51.9
TCGA-BD-A3ER-01A 62 years, male, white, stage:Stage II, alive, 1115 days 51.1
TCGA-DD-A1EF-01A 57 years, female, white, stage:Stage I, dead, 394 days 51.0
TCGA-DD-AACG-01A 52 years, male, asian, stage:Stage II, dead, 469 days 50.1
TCGA-DD-AAVU-01A 46 years, male, asian, stage:Stage II, alive, 2202 days 49.7
TCGA-DD-AADG-01A 70 years, male, asian, stage:Stage IIIA, alive, 1145 days 48.9
TCGA-G3-A7M6-01A 60 years, female, white, stage:Stage I, alive, 632 days 48.6
TCGA-CC-5262-01A 67 years, male, asian, stage:Stage IIIC, dead, 103 days 47.9
TCGA-DD-AADU-01A 60 years, male, asian, stage:Stage II, alive, 554 days 45.8
TCGA-ED-A66Y-01A 51 years, female, asian, stage:Stage IIIA, dead, 296 days 45.6
TCGA-FV-A23B-01A 70 years, female, white, stage:Stage II, dead, 1852 days 45.4
TCGA-K7-AAU7-01A 61 years, male, white, stage:Stage II, alive, 359 days 45.3
TCGA-G3-A3CK-01A 61 years, male, asian, stage:Stage I, alive, 585 days 45.1
TCGA-DD-AAD6-01A 66 years, male, asian, stage:Stage IIIA, alive, 672 days 42.9
TCGA-DD-AADY-01A 55 years, female, asian, stage:Stage I, alive, 555 days 42.8
TCGA-CC-A8HS-01A 18 years, male, asian, stage:Stage IIIC, dead, 300 days 42.7
TCGA-2Y-A9HA-01A 70 years, male, white, stage:Stage II, dead, 36 days 41.7
TCGA-BC-A10X-01A 52 years, female, white, stage:Stage IIIA, dead, 770 days 41.3
TCGA-XR-A8TE-01A 16 years, male, white, stage:Stage IIIA, alive, 925 days 41.0
TCGA-BW-A5NO-01A 50 years, male, black or african american, stage:Stage IIIA, alive, 20 days 40.7
TCGA-DD-AADN-01A 59 years, male, asian, stage:Stage I, alive, 898 days 39.7
TCGA-2Y-A9H7-01A 81 years, female, white, stage:Stage I, alive, 1168 days 38.8
TCGA-DD-AAE1-01A 52 years, male, asian, stage:Stage I, alive, 552 days 38.6
TCGA-MI-A75G-01A 63 years, male, white, stage:Stage II, alive, 698 days 36.3
TCGA-MR-A8JO-01A 34 years, male, white, stage:Stage I, alive, 330 days 35.8
TCGA-DD-AADV-01A 50 years, male, asian, stage:Stage I, alive, 574 days 35.3
TCGA-CC-A9FS-01A 55 years, male, asian, stage:Stage II, alive, 211 days 34.8
TCGA-DD-AACF-01A 68 years, male, asian, stage:Stage I, dead, 365 days 34.6
TCGA-DD-AAVZ-01A 38 years, male, asian, stage:Stage I, alive, 1900 days 33.5
TCGA-DD-A4NO-01A 65 years, male, white, stage:Stage I, alive, 2245 days 32.1
TCGA-KR-A7K2-01A 64 years, male, white, stage:Stage I, alive, 829 days 32.0
TCGA-MR-A520-01A 58 years, male, white, stage:Stage I, alive, 229 days 31.7
TCGA-DD-AAEB-01A 60 years, male, asian, stage:Stage I, alive, 478 days 30.8
TCGA-DD-AACV-01A 53 years, male, asian, stage:Stage I, alive, 1531 days 29.6
TCGA-DD-AAC9-01A 51 years, male, asian, stage:Stage I, alive, 347 days 28.3
TCGA-RC-A7SH-01A 42 years, male, asian, stage:Stage II, alive, 468 days 28.1
TCGA-DD-AACP-01A 64 years, male, asian, stage:Stage I, alive, 415 days 26.0
TCGA-DD-AADD-01A 51 years, male, asian, stage:Stage I, alive, 1231 days 25.2
TCGA-DD-A11B-01A 73 years, male, white, stage:Stage I, dead, 14 days 24.0
TCGA-XR-A8TF-01A 74 years, male, white, stage:Stage I, dead, 693 days 24.0
TCGA-CC-A123-01A 24 years, female, asian, stage:Stage IIIA, alive, 219 days 23.6
TCGA-CC-5258-01A 48 years, male, asian, stage:Stage II, dead, 129 days 23.5
TCGA-EP-A26S-01A 70 years, male, white, stage:Stage I, alive, 608 days 23.0
TCGA-ES-A2HS-01A 80 years, male, white, stage:Stage I, dead, 688 days 19.9
TCGA-CC-A7IK-01A 59 years, male, asian, stage:Stage IIIA, dead, 262 days 16.1
TCGA-ED-A7PY-01A 20 years, female, asian, stage:Stage II, alive, 390 days 15.6
TCGA-DD-AACI-01A 69 years, male, asian, stage:Stage II, alive, 1618 days 14.9
TCGA-CC-A7IF-01A 59 years, male, asian, stage:Stage IIIA, dead, 649 days 14.3
TCGA-DD-AADI-01A 43 years, female, asian, stage:Stage I, alive, 1085 days 14.1
TCGA-DD-AACO-01A 40 years, male, asian, stage:Stage I, alive, 1876 days 11.2
TCGA-WX-AA46-01A 61 years, male, white, stage:Stage II, alive, 756 days 9.3
TCGA-DD-A1EH-01A 23 years, male, white, stage:Stage III, alive, 1495 days 8.7
TCGA-CC-A7II-01A 54 years, male, asian, stage:Stage IIIA, alive, 399 days 8.5
TCGA-DD-A1EL-01A 23 years, male, black or african american, stage:Stage II, dead, 415 days 8.4
TCGA-UB-A7MF-01A 56 years, male, white, stage:Stage IIIA, dead, 214 days 7.9
TCGA-ZP-A9D0-01A 67 years, female, black or african american, stage:'--, alive, 1091 days 7.8
TCGA-DD-A3A6-01A 72 years, female, white, stage:Stage II, dead, 3258 days 7.7
TCGA-DD-A118-01A 77 years, female, white, stage:Stage II, alive, 3437 days 7.4
TCGA-5C-A9VG-01A 58 years, male, white, stage:Stage II, alive, 328 days 6.5
TCGA-WJ-A86L-01A 68 years, female, white, stage:Stage I, alive, 345 days 4.7
TCGA-FV-A3I1-01A 81 years, female, white, stage:Stage II, dead, 247 days 3.7
TCGA-FV-A4ZQ-01A 52 years, male, white, stage:Stage I, alive, 12 days 3.6
TCGA-BC-A10U-01A 69 years, male, white, stage:'--, dead, 837 days 3.3
TCGA-GJ-A6C0-01A 75 years, female, white, stage:Stage II, dead, 31 days 2.9
TCGA-2Y-A9GS-01A 58 years, male, white, stage:'--, dead, 724 days 2.7
TCGA-CC-A7IL-01A 61 years, male, asian, stage:Stage IIIA, dead, 278 days 2.4
TCGA-DD-AAE4-01A 49 years, female, asian, stage:Stage I, alive, 608 days 2.3
TCGA-XR-A8TD-01A 49 years, female, white, stage:Stage IIIB, alive, 1030 days 2.0
TCGA-DD-A3A7-01A 67 years, male, stage:Stage IIIB, dead, 419 days 2.0
TCGA-HP-A5MZ-01A 78 years, male, stage:Stage I, dead, 91 days 1.7
TCGA-ZS-A9CE-01A 79 years, female, white, stage:Stage II, alive, 1241 days 1.7
TCGA-ED-A7PX-01A 48 years, female, asian, stage:Stage II, alive, 6 days 1.5
TCGA-DD-AAED-01A 51 years, male, asian, stage:Stage I, alive, 763 days 1.5
TCGA-2Y-A9GW-01A 64 years, male, white, stage:Stage I, dead, 1271 days 1.5
TCGA-DD-A1ED-01A 68 years, male, white, stage:Stage I, alive, 2301 days 1.4
TCGA-MI-A75E-01A 61 years, male, white, stage:Stage IIIC, alive, 507 days 1.4
TCGA-EP-A2KA-01A 52 years, female, white, stage:Stage IIIA, dead, 627 days 1.4
TCGA-CC-A5UD-01A 45 years, male, asian, stage:Stage IIIA, dead, 304 days 1.4
TCGA-LG-A9QD-01A 68 years, male, white, stage:Stage IIIA, alive, 366 days 1.4
TCGA-CC-5260-01A 61 years, female, asian, stage:Stage IIIC, dead, 87 days 1.3
TCGA-FV-A3I0-01A 76 years, female, white, stage:Stage II, alive, 848 days 1.3
TCGA-K7-A6G5-01A 66 years, male, white, stage:Stage I, alive, 512 days 1.3
TCGA-DD-AAVR-01A 44 years, male, asian, stage:Stage I, alive, 2513 days 1.3
TCGA-ED-A8O5-01A 59 years, female, asian, stage:Stage IIIA, alive, 406 days 1.3
TCGA-DD-A11C-01A 69 years, male, white, stage:Stage I, alive, 662 days 1.2
TCGA-DD-A116-01A 68 years, male, asian, stage:Stage IIIA, dead, 1622 days 1.1
TCGA-RC-A6M5-01A 20 years, female, white, stage:Stage IVA, alive, 15 days 1.0
TCGA-BC-A10Z-01A 62 years, female, white, stage:Stage I, dead, 34 days 1.0
TCGA-2Y-A9GZ-01A 82 years, female, white, stage:Stage II, dead, 848 days 0.9
TCGA-DD-AACH-01A 69 years, male, asian, stage:Stage II, dead, 195 days 0.9
TCGA-KR-A7K7-01A 61 years, female, white, stage:Stage II, alive, 951 days 0.9
TCGA-DD-A4NL-01A 46 years, male, white, stage:Stage I, alive, 1711 days 0.8
TCGA-BC-A10R-01A 66 years, female, white, stage:'--, dead, 308 days 0.8
TCGA-FV-A496-01A 84 years, female, white, stage:Stage I, alive, 10 days 0.7
TCGA-CC-A3MC-01A 54 years, male, asian, stage:Stage IIIA, alive, 363 days 0.7
TCGA-2Y-A9GY-01A 64 years, female, white, stage:Stage II, dead, 757 days 0.7
TCGA-EP-A2KB-01A 46 years, female, white, stage:Stage I, dead, 596 days 0.7
TCGA-DD-A1EE-01A 73 years, male, white, stage:Stage IIIA, dead, 349 days 0.7
TCGA-DD-A3A1-01A 65 years, male, stage:Stage IIIA, dead, 233 days 0.7
TCGA-2Y-A9GV-01A 54 years, female, white, stage:Stage I, dead, 2532 days 0.7
TCGA-BD-A2L6-01A 69 years, male, white, stage:'--, alive, 1363 days 0.6
TCGA-KR-A7K0-01A 65 years, male, white, stage:Stage I, dead, 65 days 0.6
TCGA-K7-A5RG-01A 66 years, male, black or african american, stage:Stage I, alive, 519 days 0.6
TCGA-DD-A4NF-01A 72 years, male, white, stage:Stage I, alive, 942 days 0.6
TCGA-DD-AAW1-01A 55 years, male, asian, stage:Stage IIIA, alive, 1989 days 0.5
TCGA-DD-A3A3-01A 45 years, male, asian, stage:Stage I, dead, 535 days 0.5
TCGA-DD-AAVQ-01A 38 years, male, asian, stage:Stage I, alive, 2728 days 0.5
TCGA-DD-A115-01A 53 years, male, white, stage:Stage IIIA, dead, 2542 days 0.5
TCGA-RC-A7SF-01A 66 years, male, asian, stage:Stage I, alive, 579 days 0.5
TCGA-PD-A5DF-01A 58 years, female, white, stage:Stage IIIB, dead, 639 days 0.5
TCGA-2Y-A9GX-01A 68 years, male, white, stage:Stage I, alive, 2442 days 0.5
TCGA-DD-A3A4-01A 37 years, male, white, stage:Stage IIIA, dead, 612 days 0.4
TCGA-DD-AADO-01A 55 years, male, asian, stage:Stage I, alive, 453 days 0.4
TCGA-DD-A73C-01A 65 years, female, white, stage:Stage IIIA, alive, 701 days 0.4
TCGA-G3-A7M7-01A 65 years, male, white, stage:Stage I, alive, 361 days 0.3
TCGA-DD-A113-01A 55 years, female, white, stage:Stage II, alive, 2425 days 0.3
TCGA-DD-AAVS-01A 56 years, male, asian, stage:Stage I, alive, 1823 days 0.3
TCGA-5R-AAAM-01A 65 years, female, white, stage:Stage II, dead, 46 days 0.3
TCGA-DD-A73G-01A 73 years, female, white, stage:Stage I, alive, 3478 days 0.2
TCGA-BC-A69H-01A 64 years, male, white, stage:Stage II, alive, 444 days 0.2
TCGA-DD-AAE6-01A 59 years, female, asian, stage:Stage I, alive, 141 days 0.1
TCGA-DD-A3A2-01A 76 years, female, white, stage:Stage I, dead, 2131 days 0.0
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter ploti

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisi

Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.

  Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples 330
Samples
Sample ID Sample type nRPX
823 Tumor 1.7
557 Tumor 1.6
113 Tumor 1.3
434 Normal 1.2
262 Normal 1.1
937 Tumor 1.1
395 Tumor 1.1
883 Tumor 1.0
861 Tumor 1.0
755 Tumor 1.0
467 Tumor 1.0
966 Normal 0.9
213 Tumor 0.9
724 Normal 0.8
917 Tumor 0.8
188 Normal 0.8
327 Tumor 0.8
217 Tumor 0.7
261 Tumor 0.7
383 Tumor 0.7
126 Normal 0.7
147 Tumor 0.7
277 Tumor 0.7
443 Tumor 0.6
685 Tumor 0.6
978 Normal 0.6
1031 Tumor 0.6
915 Tumor 0.6
951 Tumor 0.6
471 Tumor 0.6
661 Tumor 0.5
524 Normal 0.5
867 Tumor 0.5
231 Tumor 0.5
487 Tumor 0.5
343 Tumor 0.5
195 Tumor 0.5
161 Tumor 0.5
125 Tumor 0.5
135 Tumor 0.4
127 Tumor 0.4
268 Normal 0.4
385 Tumor 0.4
311 Tumor 0.4
955 Tumor 0.4
267 Tumor 0.4
386 Normal 0.4
977 Tumor 0.4
1015 Tumor 0.4
536 Normal 0.4
191 Tumor 0.4
421 Tumor 0.4
185 Tumor 0.4
355 Tumor 0.3
857 Tumor 0.3
914 Normal 0.3
492 Normal 0.3
523 Tumor 0.3
963 Tumor 0.3
145 Tumor 0.3
375 Tumor 0.3
362 Normal 0.3
663 Tumor 0.3
491 Tumor 0.3
138 Normal 0.3
141 Tumor 0.3
538 Normal 0.2
187 Tumor 0.2
211 Tumor 0.2
553 Tumor 0.2
493 Tumor 0.2
272 Normal 0.2
627 Tumor 0.2
913 Tumor 0.2
396 Normal 0.2
468 Normal 0.2
137 Tumor 0.2
258 Normal 0.2
463 Tumor 0.2
387 Tumor 0.2
425 Tumor 0.1
353 Tumor 0.1
271 Tumor 0.1
366 Normal 0.1
416 Normal 0.1
433 Tumor 0.1
956 Normal 0.1
114 Normal 0.1
146 Normal 0.1
478 Normal 0.1
455 Tumor 0.1
814 Normal 0.1
686 Normal 0.1
721 Tumor 0.1
413 Tumor 0.1
461 Tumor 0.1
451 Tumor 0.1
218 Normal 0.1
368 Normal 0.1
384 Normal 0.1
452 Normal 0.1
136 Normal 0.0
516 Normal 0.0
881 Tumor 0.0
224 Normal 0.0
358 Normal 0.0
916 Normal 0.0
444 Normal 0.0
865 Tumor 0.0
573 Tumor 0.0
367 Tumor 0.0
696 Normal 0.0
257 Tumor 0.0
1043 Tumor 0.0
312 Normal 0.0
1025 Tumor 0.0
525 Tumor 0.0
716 Normal 0.0
535 Tumor 0.0
142 Normal 0.0
574 Normal 0.0
344 Normal 0.0
192 Normal 0.0
975 Tumor 0.0
858 Normal 0.0
635 Tumor 0.0
952 Normal -0.1
816 Normal -0.1
852 Normal -0.1
415 Tumor -0.1
533 Tumor -0.1
662 Normal -0.1
968 Normal -0.1
223 Tumor -0.1
214 Normal -0.1
232 Normal -0.1
464 Normal -0.1
953 Tumor -0.1
628 Normal -0.1
954 Normal -0.1
328 Normal -0.1
365 Tumor -0.1
392 Normal -0.1
352 Normal -0.1
563 Tumor -0.2
695 Tumor -0.2
554 Normal -0.2
446 Normal -0.2
777 Tumor -0.2
1041 Tumor -0.2
738 Normal -0.2
221 Tumor -0.2
357 Tumor -0.2
925 Tumor -0.2
283 Tumor -0.2
432 Normal -0.2
528 Normal -0.2
278 Normal -0.2
778 Normal -0.2
196 Normal -0.2
393 Tumor -0.2
518 Normal -0.2
526 Normal -0.2
1021 Tumor -0.2
162 Normal -0.2
124 Normal -0.2
447 Tumor -0.2
567 Tumor -0.2
111 Normal -0.2
422 Normal -0.2
884 Normal -0.2
132 Normal -0.2
641 Tumor -0.2
498 Normal -0.3
918 Normal -0.3
1028 Normal -0.3
715 Tumor -0.3
391 Tumor -0.3
558 Normal -0.3
922 Normal -0.3
477 Tumor -0.3
1022 Normal -0.3
745 Tumor -0.3
445 Tumor -0.3
697 Tumor -0.3
664 Normal -0.3
666 Normal -0.3
286 Normal -0.3
514 Normal -0.3
394 Normal -0.3
361 Tumor -0.3
815 Tumor -0.3
882 Normal -0.3
212 Normal -0.3
424 Normal -0.3
824 Normal -0.3
958 Normal -0.3
1045 Tumor -0.3
186 Normal -0.3
128 Normal -0.3
356 Normal -0.3
423 Tumor -0.4
874 Normal -0.4
313 Tumor -0.4
851 Tumor -0.4
284 Normal -0.4
878 Normal -0.4
967 Tumor -0.4
228 Normal -0.4
982 Normal -0.4
466 Normal -0.4
672 Normal -0.4
148 Normal -0.4
1044 Normal -0.4
564 Normal -0.4
964 Normal -0.4
376 Normal -0.4
818 Normal -0.4
1014 Normal -0.4
448 Normal -0.4
537 Tumor -0.4
984 Normal -0.4
546 Normal -0.4
351 Tumor -0.4
332 Normal -0.4
112 Tumor -0.4
123 Tumor -0.4
497 Tumor -0.4
1042 Normal -0.4
938 Normal -0.4
926 Normal -0.4
456 Normal -0.4
727 Tumor -0.4
737 Tumor -0.5
864 Normal -0.5
494 Normal -0.5
648 Normal -0.5
222 Normal -0.5
172 Normal -0.5
354 Normal -0.5
171 Tumor -0.5
862 Normal -0.5
488 Normal -0.5
388 Normal -0.5
976 Normal -0.5
474 Normal -0.5
414 Normal -0.5
1046 Normal -0.5
957 Tumor -0.5
412 Normal -0.5
462 Normal -0.5
1016 Normal -0.5
873 Tumor -0.5
427 Tumor -0.5
636 Normal -0.5
642 Normal -0.5
1013 Tumor -0.5
866 Normal -0.5
426 Normal -0.5
698 Normal -0.5
572 Normal -0.5
342 Normal -0.5
436 Normal -0.5
863 Tumor -0.6
481 Tumor -0.6
527 Tumor -0.6
868 Normal -0.6
723 Tumor -0.6
431 Tumor -0.6
298 Normal -0.6
1032 Normal -0.6
341 Tumor -0.6
817 Tumor -0.6
785 Tumor -0.6
513 Tumor -0.6
465 Tumor -0.6
1026 Normal -0.6
665 Tumor -0.6
472 Normal -0.6
534 Normal -0.6
568 Normal -0.7
227 Tumor -0.7
742 Normal -0.7
965 Tumor -0.7
714 Normal -0.7
617 Tumor -0.7
297 Tumor -0.7
285 Tumor -0.7
923 Tumor -0.7
877 Tumor -0.7
728 Normal -0.7
944 Normal -0.7
722 Normal -0.7
943 Tumor -0.7
517 Tumor -0.7
364 Normal -0.7
482 Normal -0.7
813 Tumor -0.7
744 Normal -0.7
647 Tumor -0.7
981 Tumor -0.8
713 Tumor -0.8
1027 Tumor -0.8
671 Tumor -0.8
545 Tumor -0.8
912 Normal -0.8
924 Normal -0.8
983 Tumor -0.8
618 Normal -0.8
363 Tumor -0.8
746 Normal -0.8
515 Tumor -0.9
756 Normal -0.9
741 Tumor -0.9
428 Normal -0.9
411 Tumor -0.9
473 Tumor -0.9
331 Tumor -0.9
484 Normal -0.9
483 Tumor -0.9
911 Tumor -1.0
314 Normal -1.0
921 Tumor -1.0
435 Tumor -1.1
786 Normal -1.1
616 Normal -1.1
615 Tumor -1.2
571 Tumor -1.2
131 Tumor -1.2
743 Tumor -2.1
Show allShow less
LIVER CANCER - Protein expressioni

A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.

Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Pending cancer tissue analysis

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