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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:259.1 nTPM
HPA Brain:11.1 nTPM
GTEx:259.1 nTPM
FANTOM5:154.8 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 9.5
1981 Female, age 72, midline 11.5
2565 Male, age 75, midline 10.8
2816 Male, age 47, midline 10.0
2194 Female, age 79, both hemispheres 8.0
2048 Male, age 55, midline 7.3
Cervical spinal cord, dorsal horn
nTPM: 11.1
2297 Male, age 75, both hemispheres 17.9
2069 Male, age 47, both hemispheres 13.5
2296 Male, age 66, both hemispheres 10.9
2721 Male, age 90, both hemispheres 9.7
2173 Female, age 72, unknown 7.8
1877 Male, age 55, unknown 6.7
Cervical spinal cord, ventral horn
nTPM: 10.6
2098 Female, age 72, unknown 16.9
2809 Male, age 90, both hemispheres 12.0
2295 Male, age 66, both hemispheres 11.6
2068 Male, age 55, unknown 8.4
2480 Male, age 75, both hemispheres 8.3
2820 Female, age 79, both hemispheres 6.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 259.1
Samples: 159

Max nTPM: 605.7
Min nTPM: 109.4
Std nTPM: 86.8
Median nTPM: 235.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 605.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 597.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 461.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 455.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 451.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 439.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 426.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 408.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 405.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 405.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 398.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 394.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 391.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 390.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 381.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 371.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 365.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 363.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 360.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 358.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 355.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 354.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 353.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 347.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 346.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 345.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 345.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 342.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 338.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 336.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 335.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 335.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 324.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 322.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 321.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 319.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 316.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 315.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 313.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 310.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 310.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 310.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 309.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 309.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 307.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 307.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 306.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 301.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 299.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 297.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 293.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 293.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 291.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 290.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 282.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 281.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 280.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 277.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 266.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 266.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 264.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 258.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 256.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 254.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 251.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 249.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 249.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 247.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 247.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 247.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 246.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 245.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 245.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 244.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 243.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 241.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 240.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 238.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 236.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 235.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 234.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 234.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 233.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 232.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 231.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 230.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 228.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 228.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 226.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 226.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 225.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 225.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 225.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 224.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 224.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 224.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 224.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 223.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 223.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 223.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 221.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 220.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 220.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 220.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 220.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 218.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 217.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 215.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 214.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 214.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 211.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 210.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 209.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 208.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 206.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 206.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 204.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 203.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 200.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 199.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 196.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 194.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 194.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 193.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 192.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 190.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 190.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 190.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 189.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 188.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 188.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 185.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 184.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 183.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 181.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 180.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 180.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 179.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 177.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 175.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 169.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 168.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 168.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 164.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 163.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 154.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 144.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 143.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 141.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 141.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 140.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 140.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 138.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 135.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 129.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 128.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 127.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 112.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 109.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

154.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 154.8
FF:10159-103A6 76 years, female 186.8
FF:10181-103D1 60 years, female 122.8

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