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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:698.2 nTPM
HPA:85.7 nTPM
GTEx:698.2 nTPM
FANTOM5:312.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB069456
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
overview
Male, age 65
Small intestine sample 232
nTPM: 81.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 80.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 98.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 82.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

698.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 698.2
Samples: 187

Max nTPM: 4402.0
Min nTPM: 120.5
Std nTPM: 563.6
Median nTPM: 556.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4402.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3105.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2982.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2797.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2757.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2323.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2162.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1660.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1632.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1605.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1475.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1461.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1449.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1403.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1360.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1338.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1318.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1242.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1235.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1209.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1196.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1159.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1154.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1109.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1088.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1087.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1081.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1053.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1037.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1027.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1007.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 990.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 985.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 972.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 946.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 933.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 923.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 894.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 885.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 872.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 867.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 862.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 859.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 859.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 843.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 836.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 809.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 807.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 800.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 793.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 789.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 784.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 767.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 767.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 759.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 753.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 750.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 748.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 743.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 739.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 734.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 720.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 717.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 711.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 704.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 701.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 693.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 675.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 671.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 670.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 663.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 663.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 656.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 652.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 650.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 643.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 640.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 633.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 625.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 605.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 605.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 599.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 598.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 597.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 597.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 585.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 583.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 574.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 567.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 566.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 566.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 564.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 559.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 556.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 548.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 547.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 542.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 527.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 522.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 517.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 514.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 508.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 504.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 496.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 495.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 493.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 489.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 487.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 486.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 483.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 482.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 469.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 463.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 462.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 460.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 455.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 451.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 450.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 447.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 445.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 444.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 437.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 419.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 415.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 414.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 411.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 410.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 408.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 402.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 401.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 401.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 399.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 398.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 393.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 392.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 391.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 388.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 385.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 383.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 382.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 382.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 378.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 377.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 375.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 373.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 369.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 367.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 367.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 353.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 350.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 349.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 346.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 343.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 333.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 321.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 320.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 313.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 302.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 301.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 282.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 276.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 276.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 273.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 272.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 271.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 253.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 252.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 251.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 243.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 242.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 241.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 239.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 239.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 232.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 226.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 225.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 209.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 209.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 201.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 191.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 187.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 184.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 181.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 180.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 167.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 128.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 120.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

312.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 312.9
FF:10024-101D6 15,40,85 years, mixed 312.9

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