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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGKC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
2259.9
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
63956.4
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
60715.8
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
50134.7
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
31957.4
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
29504.0
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
28565.3
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
27380.3
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
25893.9
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
24405.8
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
23233.5
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
19677.9
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
18875.5
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
17945.6
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
16989.8
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
16855.8
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
15913.2
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
15649.8
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
14800.0
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
14670.9
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
12423.5
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
9179.2
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
9059.3
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
8728.6
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
7584.7
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
6745.3
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6513.8
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
6403.6
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
6147.0
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
6027.8
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
5996.4
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
5937.4
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
5863.5
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
5859.4
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
5644.9
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
5294.9
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
4980.3
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
4942.0
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
4664.9
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
4652.2
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
4639.1
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
4348.4
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
4299.5
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
4289.0
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
4106.0
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
4003.5
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
3917.3
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
3845.5
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
3229.6
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
3034.0
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
2907.3
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
2901.2
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
2899.9
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
2898.2
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
2774.8
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
2704.0
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
2626.1
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
2483.6
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
2443.1
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
2429.6
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
2141.6
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
2085.8
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
2012.6
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
1911.5
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
1846.0
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
1826.1
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
1747.0
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
1726.2
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
1658.1
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
1655.5
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
1652.8
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
1618.9
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
1524.8
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
1491.2
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
1394.9
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
1347.4
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
1318.9
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
1278.6
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
1219.5
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
1215.0
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
1213.0
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
1204.9
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
1203.4
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
1200.7
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
1161.6
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
1139.3
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
1133.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
1118.6
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
1107.7
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
1073.7
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
1068.5
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
945.7
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
906.9
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
902.1
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
896.1
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
889.2
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
883.7
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
878.3
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
854.7
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
845.2
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
837.0
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
832.3
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
825.0
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
823.4
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
816.9
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
809.7
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
799.9
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
792.9
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
768.4
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
758.6
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
719.1
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
705.2
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
690.9
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
671.9
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
654.4
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
633.4
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
619.8
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
612.3
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
577.8
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
575.2
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
572.0
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
561.2
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
549.9
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
549.1
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
524.2
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
509.7
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
509.7
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
504.5
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
500.6
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
497.4
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
495.5
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
490.3
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
473.7
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
472.6
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
470.5
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
467.4
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
467.1
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
461.6
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
456.9
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
453.0
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
452.6
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
444.8
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
442.3
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
426.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
423.8
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
395.6
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
395.0
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
386.1
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
384.8
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
384.8
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
378.7
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
362.8
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
356.8
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
350.3
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
347.9
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
338.2
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
333.7
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
329.7
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
323.5
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
322.6
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
318.7
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
310.6
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
292.8
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
287.0
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
284.7
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
278.4
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
277.1
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
271.9
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
266.2
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
263.2
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
262.5
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
261.3
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
258.2
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
253.0
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
249.7
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
244.1
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
243.6
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
243.1
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
231.4
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
230.2
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
230.1
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
223.9
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
217.0
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
215.5
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
213.3
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
206.7
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
198.7
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
197.9
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
192.0
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
189.2
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
188.6
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
188.0
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
185.9
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
184.4
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
181.5
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
166.3
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
165.8
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
164.8
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
161.3
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
160.9
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
154.8
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
146.2
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
142.5
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
139.0
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
137.2
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
135.9
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
135.9
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
134.9
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
131.9
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
129.7
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
122.6
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
120.7
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
120.0
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
116.8
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
115.4
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
112.5
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
112.3
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
108.6
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
106.6
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
103.3
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
101.5
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
98.5
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
98.4
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
97.1
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
92.7
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
88.1
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
86.1
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
85.0
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
82.0
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
80.0
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
78.5
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
77.8
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
75.4
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
74.2
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
74.0
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
72.7
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
72.1
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
71.8
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
70.8
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
69.5
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
69.5
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
68.7
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
64.1
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
62.5
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
60.4
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
60.1
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
58.9
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
58.7
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
56.4
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
55.4
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
55.4
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
55.0
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
54.2
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
53.6
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
53.3
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
52.7
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
52.2
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
51.0
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
50.6
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
49.9
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
49.8
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
47.0
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
45.7
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
44.6
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
42.8
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
42.6
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
41.7
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
40.4
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
37.0
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
36.7
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
36.1
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
34.8
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
34.1
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
34.1
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.5
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
33.4
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
33.1
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
31.8
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
31.4
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
30.6
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
29.6
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
29.1
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
28.6
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
27.3
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
25.6
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
24.7
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
24.3
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
23.9
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
23.3
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
23.1
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
19.5
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
19.0
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
18.3
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
18.2
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
18.2
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
18.0
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
17.5
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
17.4
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
16.9
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
16.9
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
15.7
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
15.1
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
15.0
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
14.7
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
13.8
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
12.8
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
12.3
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
11.9
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
11.8
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
11.7
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
11.2
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
11.1
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.6
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
10.4
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
10.2
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
10.0
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
9.6
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
9.6
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
9.4
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
7.8
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
6.9
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
6.9
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
6.6
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
6.5
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
6.0
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
5.6
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
4.9
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
4.8
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
4.8
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
4.7
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
4.4
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
4.1
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
4.1
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
3.4
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
2.2
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
2.0
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.