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QTRT1
HPA
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  • QTRT1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

QTRT1
Synonyms TGT
Gene descriptioni

Full gene name according to HGNC.

Queuine tRNA-ribosyltransferase catalytic subunit 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband p13.2
Chromosome location (bp) 10701430 - 10713437
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000213339 (version 109)
Entrez gene 81890
HGNC HGNC:23797
UniProt Q9BXR0 (UniProt - Evidence at protein level)
neXtProt NX_Q9BXR0
GeneCards QTRT1
Antibodypedia QTRT1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) 1, 2, 3, 4. Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product (By similarity). Modification of cytoplasmic tRNAs with queuosine controls the elongation speed of cognate codons, thereby ensuring the correct folding of nascent proteins to maintain proteome integrity 5.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Glycosyltransferase, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

tRNA processing
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes the catalytic subunit of tRNA-guanine transglycosylase. tRNA-guanine transglycosylase is a heterodimeric enzyme complex that plays a critical role in tRNA modification by synthesizing the 7-deazaguanosine queuosine, which is found in tRNAs that code for asparagine, aspartic acid, histidine and tyrosine. A pseudogene of this gene is located on the long arm of chromosome X. [provided by RefSeq, Feb 2012]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
QTRT1-201
ENSP00000250237
ENST00000250237
Q9BXR0
[Direct mapping] Queuine tRNA-ribosyltransferase catalytic subunit 1
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005741 [mitochondrial outer membrane]
GO:0006400 [tRNA modification]
GO:0008033 [tRNA processing]
GO:0008479 [queuine tRNA-ribosyltransferase activity]
GO:0016020 [membrane]
GO:0016740 [transferase activity]
GO:0016757 [glycosyltransferase activity]
GO:0016763 [pentosyltransferase activity]
GO:0032991 [protein-containing complex]
GO:0042803 [protein homodimerization activity]
GO:0046872 [metal ion binding]
GO:0046982 [protein heterodimerization activity]
GO:0101030 [tRNA-guanine transglycosylation]
GO:1990234 [transferase complex]
Show all
403 aa
44 kDa
No 0
QTRT1-209
ENSP00000467394
ENST00000591643
K7EPI1
[Direct mapping] Queuine tRNA-ribosyltransferase catalytic subunit 1
Show all
Metabolic proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005741 [mitochondrial outer membrane]
GO:0006400 [tRNA modification]
GO:0016763 [pentosyltransferase activity]
GO:0101030 [tRNA-guanine transglycosylation]
Show all
124 aa
13.4 kDa
No 0
QTRT1-210
ENSP00000468811
ENST00000592254
K7ESP6
[Direct mapping] Queuine tRNA-ribosyltransferase catalytic subunit 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005741 [mitochondrial outer membrane]
GO:0006400 [tRNA modification]
GO:0016763 [pentosyltransferase activity]
GO:0101030 [tRNA-guanine transglycosylation]
Show all
180 aa
19.8 kDa
No 0
QTRT1-211
ENSP00000465974
ENST00000592376
K7EL95
[Direct mapping] Queuine tRNA-ribosyltransferase catalytic subunit 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005741 [mitochondrial outer membrane]
GO:0006400 [tRNA modification]
GO:0016763 [pentosyltransferase activity]
GO:0101030 [tRNA-guanine transglycosylation]
Show all
136 aa
14.9 kDa
No 0

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