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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:150.4 nTPM
FANTOM5:191.0 Scaled Tags Per Million
Pig:232.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA030780Antibody CAB005885Antibody CAB072343
Glial cells Not detectedHighNot detected
Neuronal cells Medium-Medium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 150.4
Samples: 246

Max nTPM: 314.2
Min nTPM: 65.4
Std nTPM: 50.4
Median nTPM: 150.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 314.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 285.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 283.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 279.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 265.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 262.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 262.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 249.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 244.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 239.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 237.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 236.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 235.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 230.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 230.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 228.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 226.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 225.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 225.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 224.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 222.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 220.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 220.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 220.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 219.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 219.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 217.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 216.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 213.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 212.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 212.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 210.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 210.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 208.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 208.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 208.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 207.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 206.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 204.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 204.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 200.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 199.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 197.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 196.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 195.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 195.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 195.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 193.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 191.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 190.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 189.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 189.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 189.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 189.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 188.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 187.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 187.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 186.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 186.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 186.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 185.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 184.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 183.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 182.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 182.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 182.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 182.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 181.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 181.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 181.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 179.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 178.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 177.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 177.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 177.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 176.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 176.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 174.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 174.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 174.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 174.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 174.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 172.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 171.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 171.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 170.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 170.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 169.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 169.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 168.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 167.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 167.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 167.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 166.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 166.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 166.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 166.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 165.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 165.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 165.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 164.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 164.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 162.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 162.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 162.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 162.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 160.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 160.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 160.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 160.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 159.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 158.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 157.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 156.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 156.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 155.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 155.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 155.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 155.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 154.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 153.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 153.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 150.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 150.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 150.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 149.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 149.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 144.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 143.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 143.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 141.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 141.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 140.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 139.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 138.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 138.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 137.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 137.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 135.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 135.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 134.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 131.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 131.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 131.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 130.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 130.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 130.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 130.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 128.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 128.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 128.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 127.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 126.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 126.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 125.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 124.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 123.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 123.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 121.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 121.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 121.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 120.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 120.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 119.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 119.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 119.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 118.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 117.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 117.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 116.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 115.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 115.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 115.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 115.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 114.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 114.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 113.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 113.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 111.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 111.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 109.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 109.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 108.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 108.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 107.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 106.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 106.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 106.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 105.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 105.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 104.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 104.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 104.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 103.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 102.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 102.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 101.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 100.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 100.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 99.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 98.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 97.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 97.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 96.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 95.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 94.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 94.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 94.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 93.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 92.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 92.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 91.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 91.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 91.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 90.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 90.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 87.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 87.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 87.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 86.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 86.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 85.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 85.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 84.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 84.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 83.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 83.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 83.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 82.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 82.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 82.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 82.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 81.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 80.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 79.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 77.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 77.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 77.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 75.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 74.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 73.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 73.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 71.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 70.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 69.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 65.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

191.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 191.0
FF:10164-103B2 76 years, female 191.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

232.3
Pig sample Sample description nTPM
Caudate
nTPM: 232.3
Samples: 4

Max nTPM: 276.4
Min nTPM: 207.3
Sample A Female 207.3
Sample B Female 233.9
Sample C Male 276.4
Sample D Male 211.7

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