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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:76.8 nTPM
HPA Brain:78.8 nTPM
GTEx:76.8 nTPM
FANTOM5:118.2 Scaled Tags Per Million
Pig:90.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.5
1981 Female, age 72, midline 78.9
2565 Male, age 75, midline 70.1
2048 Male, age 55, midline 69.5
2194 Female, age 79, both hemispheres 57.1
2816 Male, age 47, midline 56.5
Cervical spinal cord, dorsal horn
nTPM: 78.8
2296 Male, age 66, both hemispheres 94.0
2069 Male, age 47, both hemispheres 88.0
2173 Female, age 72, unknown 85.8
2297 Male, age 75, both hemispheres 77.7
1877 Male, age 55, unknown 67.8
2721 Male, age 90, both hemispheres 59.6
Cervical spinal cord, ventral horn
nTPM: 66.3
2098 Female, age 72, unknown 78.8
2480 Male, age 75, both hemispheres 71.8
2809 Male, age 90, both hemispheres 68.4
2068 Male, age 55, unknown 63.2
2295 Male, age 66, both hemispheres 60.1
2820 Female, age 79, both hemispheres 55.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 76.8
Samples: 159

Max nTPM: 114.9
Min nTPM: 37.8
Std nTPM: 14.7
Median nTPM: 77.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 114.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 114.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 108.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 105.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 105.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 105.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 103.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 103.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 102.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 102.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 102.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 99.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 98.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 95.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 94.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 93.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 92.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 92.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 91.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 91.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 91.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 89.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 89.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 89.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 89.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 89.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 89.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 89.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 89.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 89.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 88.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 88.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 88.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 88.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 87.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 87.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 87.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 86.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 86.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 85.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 85.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 84.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 84.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 84.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 84.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 84.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 83.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 83.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 83.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 83.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 82.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 82.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 82.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 82.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 82.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 81.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 81.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 81.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 81.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 81.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 80.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 80.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 79.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 79.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 79.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 79.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 79.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 79.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 78.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 78.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 78.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 78.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 78.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 77.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 77.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 77.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 77.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 76.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 76.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 76.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 75.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 75.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 75.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 75.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 75.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 75.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 75.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 75.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 74.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 74.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 74.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 73.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 73.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 73.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 72.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 72.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 72.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 72.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 72.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 71.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 71.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 71.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 71.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 71.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 70.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 69.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 69.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 68.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 68.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 68.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 68.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 68.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 67.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 67.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 66.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 66.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 66.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 65.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 65.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 65.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 65.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 65.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 64.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 63.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 62.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 62.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 62.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 62.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 61.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 60.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 59.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 59.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 59.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 58.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 58.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 57.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 57.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 57.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 57.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 56.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 56.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 55.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 52.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 52.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 50.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 47.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 44.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 43.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 41.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 40.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 37.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 118.2
FF:10181-103D1 60 years, female 137.1
FF:10159-103A6 76 years, female 99.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.0
Samples: 4

Max nTPM: 96.4
Min nTPM: 63.5
Sample A Female 96.4
Sample B Female 63.5
Sample C Male 63.9
Sample D Male 84.3
Ventral spinal cord
nTPM: 90.5
Samples: 4

Max nTPM: 99.7
Min nTPM: 73.9
Sample A Female 99.7
Sample B Female 93.1
Sample C Male 95.2
Sample D Male 73.9

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