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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:111.8 nTPM
HPA Brain:33.0 nTPM
GTEx:111.8 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:187.9 nTPM
Allen mouse:18.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.0
Sample id Sample description nTPM
Amygdala
nTPM: 33.0
2814 Male, age 76, right hemisphere 38.6
2695 Female, age 67, right hemisphere 36.7
1987 Female, age 91, left hemisphere 32.2
2514 Male, age 75, right hemisphere 32.0
2517 Female, age 94, left hemisphere 25.5
Basal amygdala
nTPM: 25.4
2609 Male, age 75, right hemisphere 33.4
2110 Male, age 80, left hemisphere 30.3
2243 Female, age 91, right hemisphere 26.3
1955 Male, age 76, both hemispheres 25.4
2685 Female, age 94, left hemisphere 22.5
2827 Female, age 67, right hemisphere 14.5
Central amygdala
nTPM: 28.1
1905 Male, age 76, both hemispheres 41.2
2515 Male, age 75, right hemisphere 28.9
2239 Male, age 80, left hemisphere 27.4
2826 Female, age 94, left hemisphere 24.0
2701 Female, age 91, right hemisphere 19.2
Corticomedial amygdala
nTPM: 25.7
2829 Male, age 80, left hemisphere 32.3
2428 Male, age 75, right hemisphere 31.6
2429 Female, age 94, left hemisphere 25.7
2242 Female, age 91, right hemisphere 25.3
2240 Male, age 76, both hemispheres 25.1
2535 Female, age 67, right hemisphere 14.2
Lateral amygdala
nTPM: 25.8
1883 Male, age 76, both hemispheres 40.0
2516 Male, age 75, right hemisphere 30.2
2534 Female, age 94, left hemisphere 25.5
2255 Female, age 91, right hemisphere 21.6
2256 Male, age 80, left hemisphere 20.2
2830 Female, age 67, right hemisphere 17.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 111.8
Samples: 152

Max nTPM: 294.2
Min nTPM: 49.0
Std nTPM: 40.9
Median nTPM: 108.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 294.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 291.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 285.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 232.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 206.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 205.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 174.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 173.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 172.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 169.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 159.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 154.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 148.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 146.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 146.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 144.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 143.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 143.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 143.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 142.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 141.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 140.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 139.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 138.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 135.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 133.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 133.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 133.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 133.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 133.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 132.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 132.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 131.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 131.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 130.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 130.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 130.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 129.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 126.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 124.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 124.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 124.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 124.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 123.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 123.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 123.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 122.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 121.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 121.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 121.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 121.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 120.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 117.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 115.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 114.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 114.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 114.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 114.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 113.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 113.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 112.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 112.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 111.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 111.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 111.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 111.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 109.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 109.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 108.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 108.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 107.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 106.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 105.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 104.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 104.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 103.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 102.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 102.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 101.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 98.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 98.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 97.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 97.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 94.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 93.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 93.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 92.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 90.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 89.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 89.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 87.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 86.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 85.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 83.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 82.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 81.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 81.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 80.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 77.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 76.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 75.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 75.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 75.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 72.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 72.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 71.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 69.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 68.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 66.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 66.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 62.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 58.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 56.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 56.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 56.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 54.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 54.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 53.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 49.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.5
FF:10151-102I7 76 years, female 68.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.3
Pig sample Sample description nTPM
Amygdala
nTPM: 61.4
Samples: 4

Max nTPM: 79.8
Min nTPM: 53.9
Sample A Female 79.8
Sample B Female 56.2
Sample C Male 53.9
Sample D Male 55.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 188.0
Samples: 4

Max nTPM: 196.0
Min nTPM: 182.9
Sample A Male 187.4
Sample B Male 182.9
Sample C Female 196.0
Sample D Female 185.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.1
67767465 Antisense, RP_040916_02_B04, Mouse strain C57BL/6J (56 days, male) 18.1

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