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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:65.8 nTPM
HPA:21.0 nTPM
GTEx:65.8 nTPM
FANTOM5:39.1 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.0
overview
Male, age 65
Small intestine sample 232
nTPM: 20.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 24.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 25.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 14.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 65.8
Samples: 187

Max nTPM: 215.3
Min nTPM: 5.5
Std nTPM: 52.6
Median nTPM: 43.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 215.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 204.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 201.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 193.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 181.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 180.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 170.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 164.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 164.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 161.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 158.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 156.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 155.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 155.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 154.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 153.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 153.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 151.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 151.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 148.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 146.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 144.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 143.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 142.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 140.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 140.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 135.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 133.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 132.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 128.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 126.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 125.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 124.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 124.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 122.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 121.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 120.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 116.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 116.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 115.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 115.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 115.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 113.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 113.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 108.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 108.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 107.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 107.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 106.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 103.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 102.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 102.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 99.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 96.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 94.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 92.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 92.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 89.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 88.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 87.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 86.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 84.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 83.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 81.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 79.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 77.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 74.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 74.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 73.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 72.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 68.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 67.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 66.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 65.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 64.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 63.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 62.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 62.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 61.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 59.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 58.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 57.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 55.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 52.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 52.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 51.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 46.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 46.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 46.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 46.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 44.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 44.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 43.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 42.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 42.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 41.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 40.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 40.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 40.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 40.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 38.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 38.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 38.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 38.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 37.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 37.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 36.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 36.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 35.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 34.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 33.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 32.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 32.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 31.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 31.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 29.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 28.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 28.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 28.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 28.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 28.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 28.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 27.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 27.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 26.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 26.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 26.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 25.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 25.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 25.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 24.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 24.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 24.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 24.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 24.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 24.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 23.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 23.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 22.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 22.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 22.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 22.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 21.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 21.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 21.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 21.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 20.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 19.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 19.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 19.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 19.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 19.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 18.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 17.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 16.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 16.7
GTEX-1192X-2526-SM-59868 50-59 years, male 16.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 15.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 15.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 15.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 14.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 14.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 14.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 14.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 13.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 13.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 13.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 12.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 12.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 12.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 11.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 11.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 11.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 11.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 11.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 10.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 10.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 10.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 9.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 8.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 8.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 5.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 5.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 39.1
FF:10024-101D6 15,40,85 years, mixed 39.1

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