MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA Brain:30.0 nTPM
GTEx:44.3 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:11.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.0
2828 Female, age 72, unknown 24.6
1870 Female, age 42, unknown 23.3
2666 Male, age 74, left hemisphere 22.4
2586 Male, age 75, left hemisphere 20.8
1827 Male, age 72, unknown 20.6
2019 Male, age 18, unknown 17.2
2411 Female, age 72, unknown 16.2
1830 Male, age 51, unknown 15.7
2219 Male, age 76, both hemispheres 14.5
1833 Male, age 53, unknown 14.4
Dorsal raphe nucleus
nTPM: 26.0
2016 Female, age 72, unknown 30.9
1828 Male, age 53, unknown 29.5
2298 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 26.4
2750 Male, age 76, both hemispheres 15.1
Inferior colliculus
nTPM: 16.2
2097 Female, age 72, unknown 21.7
1848 Female, age 42, unknown 16.3
1890 Male, age 53, unknown 15.7
2849 Male, age 72, unknown 11.0
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Periaquaductal grey, anterior
nTPM: 26.3
1795 Male, age 51, unknown 29.8
2502 Female, age 75, unknown 27.8
1947 Male, age 18, unknown 21.5
Periaquaductal grey, dorsal
nTPM: 25.4
1840 Male, age 53, unknown 28.2
2850 Male, age 76, both hemispheres 28.0
1831 Male, age 72, unknown 24.3
2464 Female, age 72, unknown 21.0
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 34.4
2053 Male, age 18, unknown 33.0
2272 Male, age 74, both hemispheres 22.5
Pretectal area
nTPM: 18.0
2273 Male, age 74, both hemispheres 27.3
2825 Male, age 18, unknown 26.4
2224 Female, age 72, unknown 25.6
2316 Male, age 76, right hemisphere 21.9
2407 Male, age 75, both hemispheres 18.3
1817 Female, age 42, unknown 15.0
1816 Male, age 51, unknown 14.7
1944 Female, age 72, unknown 12.5
2007 Male, age 72, unknown 12.1
1815 Male, age 53, unknown 12.0
2667 Female, age 75, unknown 12.0
Red nucleus
nTPM: 19.1
2503 Female, age 72, unknown 24.7
2725 Female, age 75, unknown 23.4
2227 Male, age 72, unknown 22.9
2823 Male, age 76, right hemisphere 20.6
1954 Female, age 42, unknown 19.9
2584 Male, age 75, left hemisphere 18.9
2769 Male, age 72, unknown 18.3
1865 Male, age 51, unknown 18.2
1821 Female, age 72, unknown 17.2
1904 Male, age 53, unknown 16.3
2588 Male, age 74, left hemisphere 15.8
2785 Male, age 18, unknown 13.3
Substantia nigra
nTPM: 18.4
2699 Male, age 18, unknown 29.5
2409 Female, age 72, unknown 22.0
2241 Male, age 72, unknown 20.6
1851 Male, age 51, unknown 19.1
2590 Female, age 75, unknown 17.7
2665 Male, age 74, both hemispheres 17.4
1916 Female, age 42, unknown 17.3
2583 Male, age 75, right hemisphere 14.8
1889 Female, age 72, unknown 12.8
1941 Male, age 53, unknown 12.5
Superior colliculus
nTPM: 19.3
1796 Male, age 53, unknown 26.0
1995 Male, age 72, unknown 24.7
2664 Male, age 75, both hemispheres 23.3
1913 Female, age 42, unknown 21.3
2668 Female, age 75, unknown 20.1
1839 Male, age 51, unknown 20.0
2587 Male, age 74, left hemisphere 17.8
2087 Female, age 72, unknown 16.4
2261 Male, age 18, unknown 12.0
1895 Male, age 76, right hemisphere 11.3
Ventral tegmental area
nTPM: 26.9
2021 Male, age 53, unknown 42.3
1942 Male, age 51, unknown 28.2
2223 Female, age 72, unknown 26.9
1915 Female, age 42, unknown 26.5
2410 Female, age 72, unknown 20.1
2218 Male, age 76, both hemispheres 17.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.3
Samples: 139

Max nTPM: 114.3
Min nTPM: 11.0
Std nTPM: 17.7
Median nTPM: 40.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 114.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 103.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 92.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 90.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 87.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 86.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 81.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 77.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 76.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 76.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 72.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 32.7
Min nTPM: 14.5
Sample A Female 32.7
Sample B Female 28.7
Sample C Male 23.7
Sample D Male 14.5
Midbrain
nTPM: 18.0
Samples: 4

Max nTPM: 33.7
Min nTPM: 8.9
Sample A Female 33.7
Sample B Female 17.5
Sample C Male 11.7
Sample D Male 8.9
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 22.4
Min nTPM: 14.7
Sample B Female 15.9
Sample C Male 22.4
Sample D Male 14.7
Superior colliculi
nTPM: 19.3
Samples: 4

Max nTPM: 30.3
Min nTPM: 11.1
Sample A Female 22.9
Sample B Female 30.3
Sample C Male 12.9
Sample D Male 11.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 14.7
Min nTPM: 8.9
Sample A Male 14.7
Sample B Male 11.1
Sample C Female 8.9
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
67978684 Antisense, RP_040923_01_E09, Mouse strain C57BL/6J (56 days, male) 0.2

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