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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:520.1 nTPM
HPA Brain:152.3 nTPM
GTEx:520.1 nTPM
FANTOM5:147.7 Scaled Tags Per Million
Pig:320.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

152.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 132.0
1981 Female, age 72, midline 175.0
2565 Male, age 75, midline 134.8
2816 Male, age 47, midline 122.8
2194 Female, age 79, both hemispheres 115.6
2048 Male, age 55, midline 111.8
Cervical spinal cord, dorsal horn
nTPM: 146.1
2296 Male, age 66, both hemispheres 216.4
2173 Female, age 72, unknown 188.5
2069 Male, age 47, both hemispheres 162.4
1877 Male, age 55, unknown 130.1
2297 Male, age 75, both hemispheres 90.3
2721 Male, age 90, both hemispheres 89.0
Cervical spinal cord, ventral horn
nTPM: 152.3
2098 Female, age 72, unknown 179.3
2480 Male, age 75, both hemispheres 177.4
2809 Male, age 90, both hemispheres 157.7
2068 Male, age 55, unknown 154.7
2295 Male, age 66, both hemispheres 133.9
2820 Female, age 79, both hemispheres 111.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

520.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 520.1
Samples: 159

Max nTPM: 962.9
Min nTPM: 203.2
Std nTPM: 155.4
Median nTPM: 515.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 962.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 898.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 871.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 865.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 831.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 816.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 795.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 791.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 790.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 780.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 747.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 733.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 732.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 732.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 728.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 718.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 710.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 706.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 703.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 700.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 697.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 692.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 692.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 692.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 688.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 688.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 686.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 676.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 675.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 667.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 654.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 652.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 652.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 650.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 644.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 643.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 637.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 633.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 631.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 629.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 626.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 611.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 610.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 603.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 601.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 600.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 596.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 595.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 594.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 594.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 592.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 587.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 586.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 582.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 582.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 582.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 573.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 568.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 566.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 566.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 561.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 559.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 557.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 555.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 553.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 549.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 545.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 544.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 544.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 542.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 542.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 540.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 534.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 533.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 530.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 528.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 527.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 521.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 517.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 515.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 510.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 509.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 507.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 505.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 500.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 499.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 499.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 498.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 493.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 491.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 484.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 483.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 482.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 481.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 481.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 479.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 477.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 472.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 470.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 470.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 469.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 467.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 463.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 461.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 459.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 457.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 453.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 450.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 450.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 449.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 441.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 441.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 440.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 435.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 434.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 434.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 421.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 420.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 418.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 415.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 411.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 401.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 396.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 393.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 389.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 387.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 372.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 369.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 361.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 360.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 359.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 355.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 355.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 352.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 348.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 348.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 343.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 337.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 336.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 333.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 331.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 328.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 320.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 315.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 310.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 283.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 282.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 280.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 280.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 279.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 276.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 271.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 270.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 268.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 229.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 212.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 208.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 207.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 203.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

147.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 147.7
FF:10181-103D1 60 years, female 186.6
FF:10159-103A6 76 years, female 108.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 285.6
Samples: 4

Max nTPM: 324.2
Min nTPM: 256.1
Sample A Female 256.1
Sample B Female 285.7
Sample C Male 324.2
Sample D Male 276.5
Ventral spinal cord
nTPM: 320.0
Samples: 4

Max nTPM: 353.3
Min nTPM: 273.0
Sample A Female 273.0
Sample B Female 325.1
Sample C Male 328.5
Sample D Male 353.3

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