MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA Brain:47.2 nTPM
GTEx:15.8 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:33.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.5
2586 Male, age 75, left hemisphere 61.7
2666 Male, age 74, left hemisphere 45.8
2828 Female, age 72, unknown 45.5
1827 Male, age 72, unknown 41.1
1833 Male, age 53, unknown 40.5
1830 Male, age 51, unknown 40.3
2411 Female, age 72, unknown 40.1
2019 Male, age 18, unknown 39.3
1870 Female, age 42, unknown 37.2
2219 Male, age 76, both hemispheres 33.8
Dorsal raphe nucleus
nTPM: 47.2
2047 Male, age 72, unknown 52.9
1828 Male, age 53, unknown 52.5
2016 Female, age 72, unknown 48.0
2298 Female, age 72, unknown 45.6
2750 Male, age 76, both hemispheres 37.2
Inferior colliculus
nTPM: 41.2
1848 Female, age 42, unknown 44.5
2849 Male, age 72, unknown 43.5
2097 Female, age 72, unknown 39.1
1890 Male, age 53, unknown 37.5
Median raphe nucleus
nTPM: 34.2
2220 Male, age 76, midline 34.2
Periaquaductal grey, anterior
nTPM: 45.4
2502 Female, age 75, unknown 48.0
1795 Male, age 51, unknown 46.4
1947 Male, age 18, unknown 41.7
Periaquaductal grey, dorsal
nTPM: 38.8
1840 Male, age 53, unknown 43.0
2850 Male, age 76, both hemispheres 41.9
2464 Female, age 72, unknown 35.6
1831 Male, age 72, unknown 34.9
Periaquaductal grey, lateral
nTPM: 42.4
2140 Male, age 76, both hemispheres 46.8
2272 Male, age 74, both hemispheres 40.5
2053 Male, age 18, unknown 39.9
Pretectal area
nTPM: 39.6
2007 Male, age 72, unknown 46.1
1817 Female, age 42, unknown 43.5
2825 Male, age 18, unknown 41.3
2407 Male, age 75, both hemispheres 40.4
1816 Male, age 51, unknown 39.4
2273 Male, age 74, both hemispheres 39.4
2224 Female, age 72, unknown 38.4
1815 Male, age 53, unknown 38.1
2667 Female, age 75, unknown 37.2
2316 Male, age 76, right hemisphere 36.6
1944 Female, age 72, unknown 35.4
Red nucleus
nTPM: 42.5
2503 Female, age 72, unknown 47.4
2769 Male, age 72, unknown 46.9
2227 Male, age 72, unknown 46.2
1954 Female, age 42, unknown 45.2
1821 Female, age 72, unknown 43.5
2785 Male, age 18, unknown 43.3
2584 Male, age 75, left hemisphere 41.7
2588 Male, age 74, left hemisphere 41.1
1865 Male, age 51, unknown 39.7
2725 Female, age 75, unknown 39.0
1904 Male, age 53, unknown 38.2
2823 Male, age 76, right hemisphere 38.2
Substantia nigra
nTPM: 37.8
1889 Female, age 72, unknown 43.0
1941 Male, age 53, unknown 41.2
1916 Female, age 42, unknown 40.8
2665 Male, age 74, both hemispheres 39.6
2699 Male, age 18, unknown 38.7
2590 Female, age 75, unknown 37.9
2583 Male, age 75, right hemisphere 37.6
2409 Female, age 72, unknown 36.5
1851 Male, age 51, unknown 35.0
2241 Male, age 72, unknown 27.6
Superior colliculus
nTPM: 39.3
2664 Male, age 75, both hemispheres 48.7
1839 Male, age 51, unknown 46.3
2261 Male, age 18, unknown 43.5
2668 Female, age 75, unknown 42.0
1796 Male, age 53, unknown 41.4
1895 Male, age 76, right hemisphere 36.7
2587 Male, age 74, left hemisphere 36.4
1995 Male, age 72, unknown 35.6
2087 Female, age 72, unknown 31.8
1913 Female, age 42, unknown 30.5
Ventral tegmental area
nTPM: 37.5
2223 Female, age 72, unknown 40.2
2410 Female, age 72, unknown 40.1
2218 Male, age 76, both hemispheres 38.2
1942 Male, age 51, unknown 36.8
1915 Female, age 42, unknown 36.3
2021 Male, age 53, unknown 33.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.8
Samples: 139

Max nTPM: 26.9
Min nTPM: 8.7
Std nTPM: 3.4
Median nTPM: 15.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 26.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 26.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 25.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 23.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 22.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 22.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 22.6
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 21.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 21.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.2
Samples: 4

Max nTPM: 37.7
Min nTPM: 20.0
Sample A Female 37.7
Sample B Female 23.0
Sample C Male 32.0
Sample D Male 20.0
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 45.3
Min nTPM: 23.4
Sample A Female 23.4
Sample B Female 26.7
Sample C Male 45.3
Sample D Male 28.1
Periaqueductal gray
nTPM: 28.6
Samples: 3

Max nTPM: 33.5
Min nTPM: 24.2
Sample B Female 28.1
Sample C Male 33.5
Sample D Male 24.2
Superior colliculi
nTPM: 33.1
Samples: 4

Max nTPM: 40.7
Min nTPM: 24.4
Sample A Female 33.7
Sample B Female 24.4
Sample C Male 40.7
Sample D Male 33.6

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